Variant report

Variant	rs2911502
Chromosome Location	chr5:167204469-167204470
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1459068	0.85[YRI][hapmap]
rs1459070	0.85[YRI][hapmap]
rs2909802	1.00[YRI][hapmap]
rs2911501	0.88[AFR][1000 genomes]
rs2973661	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs2973662	1.00[ASW][hapmap];1.00[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs2973665	1.00[AFR][1000 genomes]
rs2973668	0.87[YRI][hapmap];1.00[AFR][1000 genomes]
rs4242227	0.85[YRI][hapmap];1.00[AFR][1000 genomes]
rs4637571	1.00[YRI][hapmap]
rs4868805	0.85[YRI][hapmap];0.91[AFR][1000 genomes]
rs4869071	1.00[AFR][1000 genomes]
rs6863622	1.00[YRI][hapmap]
rs963184	1.00[LWK][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1032559	chr5:167070888-167210684	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2911502	AHSP	trans	lymphoblastoid	seeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167199000-167206000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:167203600-167218800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:167204000-167205800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr5:167204200-167205600	Enhancers	HMEC	breast
5	chr5:167204200-167206600	Weak transcription	Fetal Lung	lung
6	chr5:167204400-167204600	Enhancers	NHDF-Ad	bronchial
7	chr5:167204400-167205000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:167204400-167205200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr5:167204400-167205200	Enhancers	Osteobl	bone
10	chr5:167204400-167205400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr5:167204400-167205400	Enhancers	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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