Variant report

Variant	rs4868805
Chromosome Location	chr5:167177692-167177693
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1459068	1.00[YRI][hapmap]
rs1459070	1.00[YRI][hapmap]
rs2909802	0.85[YRI][hapmap]
rs2911502	0.85[YRI][hapmap];0.91[AFR][1000 genomes]
rs2973661	0.85[YRI][hapmap];0.83[AFR][1000 genomes]
rs2973662	0.85[YRI][hapmap];0.83[AFR][1000 genomes]
rs2973665	0.91[AFR][1000 genomes]
rs2973668	0.91[AFR][1000 genomes]
rs4242227	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs4637571	0.85[YRI][hapmap]
rs4869071	0.91[AFR][1000 genomes]
rs6863622	0.83[YRI][hapmap]
rs963184	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1032559	chr5:167070888-167210684	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167171000-167181200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr5:167171600-167181800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:167171800-167180000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:167171800-167180000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:167172400-167180400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr5:167177200-167178200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:167177200-167179000	Enhancers	HSMM	muscle
8	chr5:167177400-167178800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr5:167177600-167178800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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