Variant report

Variant	rs2973661
Chromosome Location	chr5:167211266-167211267
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10780110	0.83[AFR][1000 genomes]
rs1459068	0.85[YRI][hapmap]
rs1459070	0.85[YRI][hapmap]
rs2909802	1.00[YRI][hapmap]
rs2911501	0.96[AFR][1000 genomes]
rs2911502	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs2973662	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2973665	0.91[AFR][1000 genomes]
rs2973668	0.87[YRI][hapmap];0.91[AFR][1000 genomes]
rs4242227	0.85[YRI][hapmap];0.91[AFR][1000 genomes]
rs4637571	1.00[YRI][hapmap]
rs4868805	0.85[YRI][hapmap];0.83[AFR][1000 genomes]
rs4869071	0.91[AFR][1000 genomes]
rs6863622	1.00[YRI][hapmap]
rs963184	1.00[YRI][hapmap];0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167203600-167218800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:167205400-167212200	Weak transcription	HSMM	muscle
3	chr5:167209400-167214600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr5:167209800-167211600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:167210400-167211600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:167210400-167212800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr5:167210800-167217200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr5:167210800-167225000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:167211000-167211400	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr5:167211000-167214600	Weak transcription	Fetal Muscle Leg	muscle
11	chr5:167211200-167219200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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