Variant report

Variant	rs2911568
Chromosome Location	chr1:85133589-85133590
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:84969696..84972589-chr1:85131388..85134057,2	K562	blood:
2	chr1:85129600..85132992-chr1:85133159..85135939,3	K562	blood:
3	chr1:85131855..85133844-chr1:85134972..85136509,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000122432	Chromatin interaction
ENSG00000174021	Chromatin interaction

rs_ID	r²[population]
rs11164027	0.82[JPT][hapmap]
rs11164030	1.00[JPT][hapmap]
rs11164043	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs12025014	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs12031476	0.82[JPT][hapmap]
rs12035493	1.00[JPT][hapmap]
rs12042947	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs1340523	0.84[CHB][hapmap]
rs17113051	1.00[JPT][hapmap]
rs17113057	1.00[JPT][hapmap]
rs2911613	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6686971	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs6695249	0.82[JPT][hapmap]
rs7536572	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs818521	1.00[JPT][hapmap]

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85087000-85147400	Weak transcription	Gastric	stomach
2	chr1:85099200-85138200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:85106200-85140400	Weak transcription	NHEK	skin
4	chr1:85106400-85155400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr1:85108000-85155000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr1:85111800-85152000	Weak transcription	Aorta	Aorta
7	chr1:85112400-85138200	Strong transcription	K562	blood
8	chr1:85113200-85138200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr1:85113400-85138200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr1:85114400-85139000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr1:85114800-85134000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr1:85115400-85137800	Weak transcription	Small Intestine	intestine
13	chr1:85115800-85133800	Weak transcription	Lung	lung
14	chr1:85116200-85135400	Weak transcription	HMEC	breast
15	chr1:85116400-85134800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr1:85117800-85137800	Weak transcription	Psoas Muscle	Psoas
17	chr1:85119200-85134600	Weak transcription	Right Ventricle	heart
18	chr1:85119400-85136600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr1:85120600-85134800	Strong transcription	Fetal Intestine Large	intestine
20	chr1:85122800-85136000	Weak transcription	Placenta	Placenta
21	chr1:85123600-85139200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr1:85123800-85137400	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr1:85123800-85140600	Weak transcription	Brain Substantia Nigra	brain
24	chr1:85124200-85137600	Weak transcription	HSMMtube	muscle
25	chr1:85124200-85137800	Weak transcription	Esophagus	oesophagus
26	chr1:85124400-85134600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr1:85124400-85138000	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr1:85124400-85144400	Weak transcription	Rectal Smooth Muscle	rectum
29	chr1:85124400-85145200	Weak transcription	Fetal Brain Male	brain
30	chr1:85124400-85149200	Weak transcription	Brain Angular Gyrus	brain
31	chr1:85124600-85135600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr1:85124600-85135600	Weak transcription	Brain Hippocampus Middle	brain
33	chr1:85124600-85137000	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr1:85124600-85140200	Weak transcription	Colon Smooth Muscle	Colon
35	chr1:85124600-85154400	Weak transcription	A549	lung
36	chr1:85124800-85137000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr1:85124800-85138800	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr1:85124800-85153800	Weak transcription	Hela-S3	cervix
39	chr1:85125000-85153400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr1:85125000-85153600	Weak transcription	Fetal Kidney	kidney
41	chr1:85125200-85133600	Weak transcription	Stomach Smooth Muscle	stomach
42	chr1:85125200-85137800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr1:85125600-85135200	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr1:85125600-85141600	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr1:85126200-85134200	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr1:85126200-85140200	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr1:85126200-85154000	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr1:85126400-85135200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr1:85126400-85143000	Weak transcription	Primary hematopoietic stem cells	blood
50	chr1:85126400-85154200	Weak transcription	Primary T cells fromperipheralblood	blood

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