Variant report

Variant	rs12042947
Chromosome Location	chr1:85129849-85129850
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:85129600..85132992-chr1:85133159..85135939,3	K562	blood:
2	chr1:85123437..85125078-chr1:85129043..85131076,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11164027	0.93[CEU][hapmap];0.82[AMR][1000 genomes]
rs11164029	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11164030	0.93[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11164043	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11164044	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11164046	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11164047	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11802347	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12024245	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12025014	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12031476	1.00[CEU][hapmap];0.82[AMR][1000 genomes]
rs12045905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12409045	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1340529	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1578329	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17113051	0.93[CEU][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17113057	0.81[CEU][hapmap];0.82[AMR][1000 genomes]
rs17114425	0.81[ASN][1000 genomes]
rs2911568	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs2911613	0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2943673	0.83[ASN][1000 genomes]
rs4506477	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6576721	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6659803	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6686971	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6695249	0.93[CEU][hapmap]
rs72952191	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72952199	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72954003	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72954029	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7512978	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7529024	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7530459	0.81[ASN][1000 genomes]
rs7536572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7553039	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs818521	0.81[CHB][hapmap];0.86[JPT][hapmap]

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85087000-85147400	Weak transcription	Gastric	stomach
2	chr1:85099200-85138200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:85099400-85131200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:85106200-85140400	Weak transcription	NHEK	skin
5	chr1:85106400-85155400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr1:85108000-85155000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr1:85109200-85133000	Weak transcription	Pancreas	Pancrea
8	chr1:85111400-85131400	Weak transcription	HSMM	muscle
9	chr1:85111800-85152000	Weak transcription	Aorta	Aorta
10	chr1:85112400-85138200	Strong transcription	K562	blood
11	chr1:85112600-85130600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr1:85113000-85131200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr1:85113200-85138200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr1:85113400-85138200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr1:85114400-85130800	Weak transcription	Ovary	ovary
16	chr1:85114400-85139000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr1:85114600-85130800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr1:85114800-85133000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr1:85114800-85134000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr1:85115400-85137800	Weak transcription	Small Intestine	intestine
21	chr1:85115800-85133800	Weak transcription	Lung	lung
22	chr1:85116200-85135400	Weak transcription	HMEC	breast
23	chr1:85116400-85134800	Weak transcription	Brain Cingulate Gyrus	brain
24	chr1:85117800-85137800	Weak transcription	Psoas Muscle	Psoas
25	chr1:85119200-85134600	Weak transcription	Right Ventricle	heart
26	chr1:85119400-85131400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr1:85119400-85136600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr1:85120600-85134800	Strong transcription	Fetal Intestine Large	intestine
29	chr1:85122800-85136000	Weak transcription	Placenta	Placenta
30	chr1:85123200-85130000	Strong transcription	Primary B cells from cord blood	blood
31	chr1:85123600-85139200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr1:85123800-85137400	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr1:85123800-85140600	Weak transcription	Brain Substantia Nigra	brain
34	chr1:85124200-85131400	Weak transcription	Osteobl	bone
35	chr1:85124200-85137600	Weak transcription	HSMMtube	muscle
36	chr1:85124200-85137800	Weak transcription	Esophagus	oesophagus
37	chr1:85124400-85130200	Weak transcription	Fetal Muscle Trunk	muscle
38	chr1:85124400-85131000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr1:85124400-85134600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr1:85124400-85138000	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr1:85124400-85144400	Weak transcription	Rectal Smooth Muscle	rectum
42	chr1:85124400-85145200	Weak transcription	Fetal Brain Male	brain
43	chr1:85124400-85149200	Weak transcription	Brain Angular Gyrus	brain
44	chr1:85124600-85135600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr1:85124600-85135600	Weak transcription	Brain Hippocampus Middle	brain
46	chr1:85124600-85137000	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr1:85124600-85140200	Weak transcription	Colon Smooth Muscle	Colon
48	chr1:85124600-85154400	Weak transcription	A549	lung
49	chr1:85124800-85137000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr1:85124800-85138800	Weak transcription	Primary T helper cells PMA-I stimulated	--

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