Variant report

Variant	rs4506477
Chromosome Location	chr1:85178600-85178601
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11164029	0.81[EUR][1000 genomes]
rs11164030	0.84[EUR][1000 genomes]
rs11164043	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11164044	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11164046	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11164047	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11802347	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12024245	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12025014	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12031476	0.85[CEU][hapmap]
rs12042947	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12045905	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12409045	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1340529	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1578329	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17114425	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2911568	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs2911613	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs6576721	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6659803	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6686971	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72952191	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72952199	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72954003	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72954029	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7512978	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7529024	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7530459	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7536572	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7553039	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs818521	0.81[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85165200-85179000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:85171600-85184400	Weak transcription	Fetal Kidney	kidney
3	chr1:85174000-85180400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr1:85175000-85184200	Weak transcription	Fetal Intestine Large	intestine
5	chr1:85176000-85181400	Weak transcription	Fetal Intestine Small	intestine
6	chr1:85176200-85181200	Weak transcription	Brain Angular Gyrus	brain
7	chr1:85176400-85178600	Enhancers	Fetal Stomach	stomach
8	chr1:85176800-85178800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:85176800-85178800	Enhancers	Fetal Lung	lung
10	chr1:85176800-85178800	Enhancers	K562	blood
11	chr1:85176800-85178800	Enhancers	NHLF	lung
12	chr1:85176800-85179000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr1:85177000-85178800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr1:85177000-85178800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr1:85177000-85178800	Enhancers	NHDF-Ad	bronchial
16	chr1:85177000-85178800	Enhancers	Osteobl	bone
17	chr1:85177000-85181000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr1:85177000-85183200	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr1:85177200-85181200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr1:85177200-85181800	Enhancers	Fetal Brain Male	brain
21	chr1:85177400-85178600	Enhancers	NH-A	brain
22	chr1:85177600-85178600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr1:85177600-85178800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr1:85177800-85178600	Enhancers	Muscle Satellite Cultured Cells	--
25	chr1:85177800-85178600	Enhancers	Stomach Mucosa	stomach
26	chr1:85177800-85180000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr1:85178000-85185200	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr1:85178400-85179600	Weak transcription	Fetal Brain Female	brain
29	chr1:85178400-85180800	Weak transcription	Colon Smooth Muscle	Colon
30	chr1:85178400-85181200	Weak transcription	Rectal Smooth Muscle	rectum
31	chr1:85178600-85181200	Weak transcription	Stomach Mucosa	stomach
32	chr1:85178600-85185000	Weak transcription	NH-A	brain

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