Variant report

Variant	rs7529024
Chromosome Location	chr1:85164692-85164693
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:84970026..84972539-chr1:85163689..85165900,2	K562	blood:
2	chr1:85155313..85157722-chr1:85164509..85167486,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000122432	Chromatin interaction
ENSG00000174021	Chromatin interaction
ENSG00000117155	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11164029	0.82[EUR][1000 genomes]
rs11164030	0.84[EUR][1000 genomes]
rs11164043	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164044	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11164046	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164047	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11802347	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12024245	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12025014	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12042947	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12045905	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12409045	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1340529	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1578329	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17113051	0.81[EUR][1000 genomes]
rs17114425	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4506477	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6576721	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6659803	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6686971	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72952191	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72952199	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72954003	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72954029	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7512978	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7530459	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7536572	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7553039	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs818521	0.84[ASN][1000 genomes]

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85157400-85167200	Weak transcription	Psoas Muscle	Psoas
2	chr1:85159200-85164800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr1:85162800-85165200	Enhancers	Fetal Stomach	stomach
4	chr1:85162800-85165200	Enhancers	Stomach Smooth Muscle	stomach
5	chr1:85162800-85166200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr1:85162800-85166200	Enhancers	Fetal Brain Male	brain
7	chr1:85162800-85166200	Enhancers	Fetal Intestine Large	intestine
8	chr1:85162800-85166400	Enhancers	Fetal Intestine Small	intestine
9	chr1:85163000-85164800	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr1:85163000-85164800	Enhancers	HSMM	muscle
11	chr1:85163000-85165200	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr1:85163000-85165200	Enhancers	HMEC	breast
13	chr1:85163000-85166200	Enhancers	K562	blood
14	chr1:85163000-85166400	Enhancers	Colon Smooth Muscle	Colon
15	chr1:85163000-85168400	Enhancers	Rectal Smooth Muscle	rectum
16	chr1:85163200-85164800	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr1:85163200-85164800	Enhancers	HSMMtube	muscle
18	chr1:85163200-85165000	Enhancers	H1 Cell Line	embryonic stem cell
19	chr1:85163200-85165000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr1:85163200-85165200	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr1:85163200-85165200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr1:85163200-85165200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr1:85163200-85165200	Enhancers	Hela-S3	cervix
24	chr1:85163200-85165200	Enhancers	NHEK	skin
25	chr1:85163200-85165400	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr1:85163200-85166200	Enhancers	Duodenum Mucosa	Duodenum
27	chr1:85163400-85164800	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr1:85163400-85164800	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr1:85163400-85165000	Enhancers	HUVEC	blood vessel
30	chr1:85163400-85165200	Enhancers	H9 Cell Line	embryonic stem cell
31	chr1:85163400-85165200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr1:85163400-85165200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr1:85163400-85165200	Enhancers	Pancreatic Islets	Pancreatic Islet
34	chr1:85163400-85166200	Enhancers	Fetal Muscle Leg	muscle
35	chr1:85163600-85164800	Enhancers	Rectal Mucosa Donor 31	rectum
36	chr1:85163600-85168400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr1:85163800-85164800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr1:85163800-85164800	Enhancers	Brain Hippocampus Middle	brain
39	chr1:85163800-85164800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr1:85163800-85164800	Enhancers	Fetal Kidney	kidney
41	chr1:85163800-85164800	Enhancers	A549	lung
42	chr1:85163800-85165000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr1:85163800-85165200	Enhancers	Skeletal Muscle Female	skeletal muscle
44	chr1:85163800-85166400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr1:85164000-85164800	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr1:85164000-85164800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
47	chr1:85164000-85164800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr1:85164000-85164800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr1:85164000-85164800	Enhancers	Fetal Lung	lung
50	chr1:85164000-85164800	Enhancers	HepG2	liver

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