Variant report

Variant	rs11164046
Chromosome Location	chr1:85172633-85172634
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:85157179..85159526-chr1:85171730..85173430,2	K562	blood:
2	chr1:85151664..85154712-chr1:85171325..85174497,4	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11164030	0.82[EUR][1000 genomes]
rs11164043	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164044	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11164047	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11802347	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12024245	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12025014	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12031476	0.85[CEU][hapmap]
rs12042947	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12045905	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12409045	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1340529	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1578329	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17114425	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2911568	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2911613	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs4506477	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6576721	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6659803	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6686971	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72952191	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72952199	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72954003	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72954005	0.83[AFR][1000 genomes]
rs72954029	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7512978	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7529024	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7530459	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7536572	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.90[TSI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7553039	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs818521	0.81[CHB][hapmap];0.86[JPT][hapmap];0.84[MEX][hapmap];0.84[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85165200-85179000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:85166200-85173400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr1:85167600-85173800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr1:85167600-85177000	Weak transcription	Aorta	Aorta
5	chr1:85168400-85176800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr1:85168600-85175400	Weak transcription	Colon Smooth Muscle	Colon
7	chr1:85168600-85176400	Weak transcription	Fetal Stomach	stomach
8	chr1:85169600-85172800	Enhancers	Fetal Intestine Small	intestine
9	chr1:85169600-85175000	Enhancers	Fetal Intestine Large	intestine
10	chr1:85170000-85177400	Weak transcription	Fetal Brain Female	brain
11	chr1:85171400-85176800	Weak transcription	Fetal Lung	lung
12	chr1:85171600-85174200	Weak transcription	K562	blood
13	chr1:85171600-85177000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr1:85171600-85184400	Weak transcription	Fetal Kidney	kidney

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