Variant report

Variant	rs12409045
Chromosome Location	chr1:85170462-85170463
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:85169638..85172472-chr1:85176220..85177885,2	K562	blood:
2	chr1:85153044..85155913-chr1:85168206..85170903,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11164027	0.86[CEU][hapmap]
rs11164029	0.81[EUR][1000 genomes]
rs11164030	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs11164043	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164044	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11164046	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164047	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11802347	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12024245	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12025014	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12031476	0.92[CEU][hapmap]
rs12042947	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12045905	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1340529	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1578329	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17113051	0.85[CEU][hapmap]
rs17114425	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2911568	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs2911613	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs4506477	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6576721	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6659803	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6686971	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6695249	0.85[CEU][hapmap]
rs72952191	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72952199	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72954003	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72954029	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7512978	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7529024	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7530459	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7536572	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7553039	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs818521	0.81[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85164800-85170800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:85164800-85170800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr1:85164800-85171000	Weak transcription	Fetal Kidney	kidney
4	chr1:85165200-85179000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:85166200-85170600	Weak transcription	K562	blood
6	chr1:85166200-85173400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr1:85167600-85171400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr1:85167600-85173800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr1:85167600-85177000	Weak transcription	Aorta	Aorta
10	chr1:85168400-85176800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr1:85168600-85170600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr1:85168600-85170600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr1:85168600-85171400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr1:85168600-85175400	Weak transcription	Colon Smooth Muscle	Colon
15	chr1:85168600-85176400	Weak transcription	Fetal Stomach	stomach
16	chr1:85169200-85170800	Weak transcription	Placenta	Placenta
17	chr1:85169400-85170600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr1:85169600-85171000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr1:85169600-85171000	Enhancers	Primary B cells from cord blood	blood
20	chr1:85169600-85171000	Enhancers	Fetal Brain Male	brain
21	chr1:85169600-85171200	Enhancers	H1 Cell Line	embryonic stem cell
22	chr1:85169600-85171800	Enhancers	Liver	Liver
23	chr1:85169600-85172800	Enhancers	Fetal Intestine Small	intestine
24	chr1:85169600-85175000	Enhancers	Fetal Intestine Large	intestine
25	chr1:85170000-85171000	Weak transcription	Fetal Lung	lung
26	chr1:85170000-85171400	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr1:85170000-85177400	Weak transcription	Fetal Brain Female	brain
28	chr1:85170200-85171000	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr1:85170200-85171000	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr1:85170200-85171200	Enhancers	H9 Cell Line	embryonic stem cell
31	chr1:85170200-85171200	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr1:85170200-85171200	Enhancers	Primary B cells from peripheral blood	blood
33	chr1:85170200-85171600	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr1:85170400-85170800	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr1:85170400-85170800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr1:85170400-85171000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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