The 2.0 version of rSNPBase

Variant report

Variant rs1578329
Chromosome Location chr1:85161716-85161717
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:36 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:85157000-85163000 Weak transcription Aorta Aorta
2 chr1:85157000-85164000 Weak transcription Fetal Lung lung
3 chr1:85157000-85164600 Weak transcription Sigmoid Colon Sigmoid Colon
4 chr1:85157200-85162800 Weak transcription NHDF-Ad bronchial
5 chr1:85157200-85163000 Weak transcription Rectal Smooth Muscle rectum
6 chr1:85157200-85163400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
7 chr1:85157200-85163800 Weak transcription Brain Hippocampus Middle brain
8 chr1:85157400-85162600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
9 chr1:85157400-85162800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
10 chr1:85157400-85162800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
11 chr1:85157400-85162800 Weak transcription Fetal Brain Male brain
12 chr1:85157400-85163000 Weak transcription iPS-15b Cell Line embryonic stem cell
13 chr1:85157400-85163000 Weak transcription Colon Smooth Muscle Colon
14 chr1:85157400-85163000 Weak transcription Esophagus oesophagus
15 chr1:85157400-85163000 Weak transcription HSMM muscle
16 chr1:85157400-85163000 Weak transcription NHLF lung
17 chr1:85157400-85163200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
18 chr1:85157400-85163400 Weak transcription Fetal Muscle Leg muscle
19 chr1:85157400-85164000 Weak transcription Fetal Brain Female brain
20 chr1:85157400-85167200 Weak transcription Psoas Muscle Psoas
21 chr1:85158000-85162800 Weak transcription Stomach Smooth Muscle stomach
22 chr1:85158200-85163200 Weak transcription H1 Cell Line embryonic stem cell
23 chr1:85158200-85164000 Weak transcription Brain Substantia Nigra brain
24 chr1:85158600-85163200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
25 chr1:85158600-85163400 Weak transcription Stomach Mucosa stomach
26 chr1:85158800-85162800 Weak transcription Fetal Intestine Large intestine
27 chr1:85158800-85163400 Weak transcription Duodenum Smooth Muscle Duodenum
28 chr1:85159000-85163400 Weak transcription Small Intestine intestine
29 chr1:85159000-85163800 Weak transcription Fetal Kidney kidney
30 chr1:85159000-85164000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
31 chr1:85159200-85163800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
32 chr1:85159200-85164800 Weak transcription Primary hematopoietic stem cells short term culture blood
33 chr1:85159600-85164000 Weak transcription Fetal Thymus thymus
34 chr1:85159600-85164200 Weak transcription Primary T cells from cord blood blood
35 chr1:85161200-85162800 Weak transcription Fetal Intestine Small intestine
36 chr1:85161400-85162000 Enhancers K562 blood

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Last update: Aug 31, 2015