Variant report

Variant	rs2943673
Chromosome Location	chr1:85105544-85105545
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:30)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:30 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT5A	chr1:85105430-85105899	K562	blood:	n/a	n/a
2	POLR2A	chr1:85105538-85106845	K562	blood:	n/a	n/a
3	EP300	chr1:85105511-85105897	K562	blood:	n/a	n/a
4	PML	chr1:85105511-85105921	K562	blood:	n/a	n/a
5	STAT5A	chr1:85105466-85105857	K562	blood:	n/a	n/a
6	GATA2	chr1:85105491-85105842	K562	blood:	n/a	n/a
7	TRIM28	chr1:85105424-85105915	K562	blood:	n/a	n/a
8	POLR2A	chr1:85105537-85105855	K562	blood:	n/a	n/a
9	TEAD4	chr1:85105526-85105917	K562	blood:	n/a	n/a
10	GATA1	chr1:85105493-85105965	PBDE	blood:	n/a	n/a
11	MYC	chr1:85105497-85105820	K562	blood:	n/a	n/a
12	GABPA	chr1:85105539-85105789	K562	blood:	n/a	n/a
13	POLR2A	chr1:85105441-85106246	K562	blood:	n/a	n/a
14	NR2F2	chr1:85105496-85105885	K562	blood:	n/a	n/a
15	HDAC2	chr1:85105506-85105721	K562	blood:	n/a	n/a
16	CEBPD	chr1:85105436-85105896	K562	blood:	n/a	n/a
17	RCOR1	chr1:85105489-85105885	K562	blood:	n/a	n/a
18	CREB1	chr1:85105497-85105914	K562	blood:	n/a	n/a
19	TEAD4	chr1:85105494-85105947	K562	blood:	n/a	n/a
20	CBX3	chr1:85105422-85105814	K562	blood:	n/a	n/a
21	GATA1	chr1:85105507-85106062	K562	blood:	n/a	n/a
22	TRIM28	chr1:85105528-85105761	K562	blood:	n/a	n/a
23	NR2F2	chr1:85105399-85105962	K562	blood:	n/a	n/a
24	HDAC2	chr1:85105526-85105845	K562	blood:	n/a	n/a
25	TAL1	chr1:85105447-85106035	K562	blood:	n/a	n/a
26	POLR2A	chr1:85105535-85105832	K562	blood:	n/a	n/a
27	RCOR1	chr1:85105465-85105875	K562	blood:	n/a	n/a
28	EGR1	chr1:85105519-85105711	K562	blood:	n/a	n/a
29	CCNT2	chr1:85105533-85106223	K562	blood:	n/a	n/a
30	GATA2	chr1:85105525-85105905	K562	blood:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:85097469..85099752-chr1:85104402..85106141,3	K562	blood:
2	chr1:85097617..85099752-chr1:85104545..85106141,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000232622	TF binding region
C1orf180	TF binding region

rs_ID	r²[population]
rs12042947	0.83[ASN][1000 genomes]
rs6659803	0.83[ASN][1000 genomes]
rs7536572	0.83[ASN][1000 genomes]

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85087000-85147400	Weak transcription	Gastric	stomach
2	chr1:85099000-85109600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:85099000-85115600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr1:85099000-85123400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr1:85099200-85109200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:85099200-85109800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:85099200-85115000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:85099200-85121400	Weak transcription	NHDF-Ad	bronchial
9	chr1:85099200-85138200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr1:85099400-85105600	Weak transcription	K562	blood
11	chr1:85099400-85115000	Weak transcription	Osteobl	bone
12	chr1:85099400-85131200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr1:85099600-85122600	Weak transcription	Fetal Brain Male	brain
14	chr1:85100200-85106200	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr1:85100600-85112400	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr1:85100600-85116800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr1:85101000-85123200	Weak transcription	Fetal Kidney	kidney
18	chr1:85101000-85124400	Weak transcription	Hela-S3	cervix
19	chr1:85101200-85105800	Weak transcription	Duodenum Mucosa	Duodenum
20	chr1:85101400-85105600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr1:85101400-85109000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr1:85101600-85105800	Weak transcription	Fetal Intestine Large	intestine
23	chr1:85101600-85121000	Weak transcription	Placenta	Placenta
24	chr1:85103000-85105600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr1:85103000-85106000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr1:85103000-85115000	Weak transcription	HMEC	breast
27	chr1:85104600-85116000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr1:85104800-85111600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr1:85105000-85119000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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