The 2.0 version of rSNPBase

Variant report

Variant rs1340523
Chromosome Location chr1:85143872-85143873
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:60 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:85087000-85147400 Weak transcription Gastric stomach
2 chr1:85106400-85155400 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr1:85108000-85155000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
4 chr1:85111800-85152000 Weak transcription Aorta Aorta
5 chr1:85124400-85144400 Weak transcription Rectal Smooth Muscle rectum
6 chr1:85124400-85145200 Weak transcription Fetal Brain Male brain
7 chr1:85124400-85149200 Weak transcription Brain Angular Gyrus brain
8 chr1:85124600-85154400 Weak transcription A549 lung
9 chr1:85124800-85153800 Weak transcription Hela-S3 cervix
10 chr1:85125000-85153400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
11 chr1:85125000-85153600 Weak transcription Fetal Kidney kidney
12 chr1:85126200-85154000 Weak transcription Duodenum Smooth Muscle Duodenum
13 chr1:85126400-85154200 Weak transcription Primary T cells fromperipheralblood blood
14 chr1:85126400-85154800 Weak transcription Fetal Muscle Leg muscle
15 chr1:85126400-85155200 Weak transcription Left Ventricle heart
16 chr1:85126600-85152200 Weak transcription Thymus Thymus
17 chr1:85126600-85153400 Weak transcription Cortex derived primary cultured neurospheres brain
18 chr1:85126600-85154400 Weak transcription Fetal Stomach stomach
19 chr1:85127800-85154400 Weak transcription Brain Germinal Matrix brain
20 chr1:85128200-85153600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
21 chr1:85128600-85153200 Weak transcription Dnd41 blood
22 chr1:85128800-85151000 Weak transcription Fetal Brain Female brain
23 chr1:85130400-85153600 Weak transcription NHDF-Ad bronchial
24 chr1:85132000-85145200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
25 chr1:85134400-85153400 Weak transcription NHLF lung
26 chr1:85138000-85154800 Weak transcription HSMMtube muscle
27 chr1:85138400-85153400 Weak transcription Fetal Thymus thymus
28 chr1:85138600-85153400 Weak transcription HSMM muscle
29 chr1:85138800-85155000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
30 chr1:85139800-85152800 Weak transcription Primary T cells from cord blood blood
31 chr1:85139800-85153000 Weak transcription Primary T helper naive cells fromperipheralblood blood
32 chr1:85140000-85154200 Weak transcription Primary T helper naive cells from peripheral blood blood
33 chr1:85140800-85153400 Weak transcription NHEK skin
34 chr1:85141000-85153600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
35 chr1:85141000-85154200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
36 chr1:85141000-85154200 Weak transcription Duodenum Mucosa Duodenum
37 chr1:85141400-85145200 Weak transcription Pancreatic Islets Pancreatic Islet
38 chr1:85141400-85152800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
39 chr1:85141400-85154200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
40 chr1:85141600-85145200 Weak transcription Colon Smooth Muscle Colon
41 chr1:85141600-85152800 Weak transcription Brain Anterior Caudate brain
42 chr1:85141800-85145200 Weak transcription HUES6 Cell Line embryonic stem cell
43 chr1:85141800-85145800 Weak transcription H9 Cell Line embryonic stem cell
44 chr1:85141800-85154200 Weak transcription iPS-18 Cell Line embryonic stem cell
45 chr1:85142000-85144600 Weak transcription HUES48 Cell Line embryonic stem cell
46 chr1:85142200-85145400 Weak transcription iPS-15b Cell Line embryonic stem cell
47 chr1:85142200-85154200 Weak transcription HUES64 Cell Line embryonic stem cell
48 chr1:85142200-85154200 Weak transcription iPS-20b Cell Line embryonic stem cell
49 chr1:85143000-85144000 ZNF genes & repeats Primary hematopoietic stem cells blood
50 chr1:85143000-85144200 Strong transcription Fetal Intestine Large intestine

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Last update: Aug 31, 2015