Variant report

Variant	rs11164048
Chromosome Location	chr1:85174994-85174995
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:85156633..85159408-chr1:85174909..85176958,2	MCF-7	breast:
2	chr1:85156009..85157744-chr1:85174703..85176988,2	K562	blood:

Variant related genes	Relation type
ENSG00000117155	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10218582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1057746	0.84[CEU][hapmap];0.90[CHB][hapmap];0.82[GIH][hapmap];0.89[JPT][hapmap];0.92[TSI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10874454	0.81[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11161435	0.81[CHB][hapmap]
rs11161436	0.81[CHB][hapmap]
rs11164031	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11164032	0.84[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11164033	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11164034	0.84[CEU][hapmap];0.90[CHB][hapmap];0.82[GIH][hapmap];0.89[JPT][hapmap];0.80[MEX][hapmap];0.92[TSI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11164036	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11164041	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12044089	0.86[EUR][1000 genomes]
rs12049262	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12137124	0.93[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.83[CHD][hapmap];0.91[GIH][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12730273	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12736243	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1340523	0.82[TSI][hapmap]
rs17114112	0.85[YRI][hapmap]
rs2911562	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs2911564	0.82[JPT][hapmap]
rs2911566	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs3768239	0.90[CHB][hapmap];0.83[JPT][hapmap]
rs3768240	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3768241	0.84[CEU][hapmap];0.92[YRI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3768242	0.84[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3768243	0.84[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4537578	0.84[CEU][hapmap];0.90[CHB][hapmap];0.82[GIH][hapmap];0.89[JPT][hapmap];0.92[TSI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6681911	0.84[CEU][hapmap];0.90[CHB][hapmap];0.82[GIH][hapmap];0.89[JPT][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7524511	0.85[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11164048	LPAR3	cis	parietal	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85165200-85179000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:85167600-85177000	Weak transcription	Aorta	Aorta
3	chr1:85168400-85176800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr1:85168600-85175400	Weak transcription	Colon Smooth Muscle	Colon
5	chr1:85168600-85176400	Weak transcription	Fetal Stomach	stomach
6	chr1:85169600-85175000	Enhancers	Fetal Intestine Large	intestine
7	chr1:85170000-85177400	Weak transcription	Fetal Brain Female	brain
8	chr1:85171400-85176800	Weak transcription	Fetal Lung	lung
9	chr1:85171600-85177000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr1:85171600-85184400	Weak transcription	Fetal Kidney	kidney
11	chr1:85174000-85180400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr1:85174200-85175600	Enhancers	K562	blood
13	chr1:85174200-85176800	Weak transcription	NHLF	lung
14	chr1:85174200-85177000	Weak transcription	Osteobl	bone
15	chr1:85174400-85176800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr1:85174800-85175000	Weak transcription	Fetal Intestine Small	intestine
17	chr1:85174800-85176800	Enhancers	Fetal Brain Male	brain

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