Variant report

Variant	rs11161436
Chromosome Location	chr1:85206477-85206478
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:85197216..85199232-chr1:85204194..85206731,2	K562	blood:
2	chr1:85153604..85156200-chr1:85205472..85208560,3	K562	blood:
3	chr1:85203342..85206784-chr1:85207090..85211392,4	K562	blood:
4	chr1:85202400..85206310-chr1:85206400..85208590,3	K562	blood:

Variant related genes	Relation type
ENSG00000117155	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10465723	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1057746	0.90[CHB][hapmap];0.81[CHD][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs10874453	0.89[CHB][hapmap];0.87[JPT][hapmap]
rs10874454	0.87[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11161435	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164031	0.83[ASN][1000 genomes]
rs11164032	0.89[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs11164033	0.83[ASN][1000 genomes]
rs11164034	0.90[CHB][hapmap];0.81[CHD][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs11164036	0.88[ASN][1000 genomes]
rs11164041	0.92[ASN][1000 genomes]
rs11164048	0.81[CHB][hapmap]
rs12044089	0.80[ASN][1000 genomes]
rs12137124	0.90[CHB][hapmap];0.84[CHD][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs12730273	0.92[ASN][1000 genomes]
rs12736243	0.80[ASN][1000 genomes]
rs17114112	0.85[YRI][hapmap]
rs2911562	0.84[CHB][hapmap];0.81[CHD][hapmap];0.88[JPT][hapmap]
rs2911564	0.81[CHB][hapmap]
rs2911566	0.84[CHB][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs3118466	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs3768239	0.90[CHB][hapmap];0.83[CHD][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs3768240	0.91[ASN][1000 genomes]
rs3768241	0.91[ASN][1000 genomes]
rs3768242	0.90[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs3768243	0.90[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs4537578	0.90[CHB][hapmap];0.81[CHD][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs57636989	0.86[ASN][1000 genomes]
rs6681911	0.90[CHB][hapmap];0.81[CHD][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs7524511	0.86[CHB][hapmap];0.84[JPT][hapmap];0.91[ASN][1000 genomes]
rs7550108	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs818524	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85204200-85212800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:85204200-85230400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:85204800-85206600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:85204800-85206800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr1:85205400-85206600	Enhancers	H1 Cell Line	embryonic stem cell
6	chr1:85205400-85208000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr1:85205800-85206600	Enhancers	Fetal Brain Female	brain
8	chr1:85205800-85208000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr1:85206000-85207600	Weak transcription	Fetal Brain Male	brain
10	chr1:85206200-85206800	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr1:85206200-85214000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr1:85206400-85207400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr1:85206400-85207400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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