Variant report

Variant	rs7550108
Chromosome Location	chr1:85191736-85191737
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:85083999..85086788-chr1:85190313..85192578,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10465723	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1057746	0.83[ASN][1000 genomes]
rs10874454	0.83[ASN][1000 genomes]
rs11161435	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11161436	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11164031	0.83[ASN][1000 genomes]
rs11164032	0.83[ASN][1000 genomes]
rs11164033	0.83[ASN][1000 genomes]
rs11164034	0.86[ASN][1000 genomes]
rs11164036	0.88[ASN][1000 genomes]
rs11164041	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12044089	0.81[ASN][1000 genomes]
rs12137124	0.92[ASN][1000 genomes]
rs12730273	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12736243	0.80[ASN][1000 genomes]
rs3118466	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3768239	0.91[ASN][1000 genomes]
rs3768240	0.91[ASN][1000 genomes]
rs3768241	0.91[ASN][1000 genomes]
rs3768242	0.86[ASN][1000 genomes]
rs3768243	0.86[ASN][1000 genomes]
rs4537578	0.83[ASN][1000 genomes]
rs57636989	0.84[ASN][1000 genomes]
rs6681911	0.83[ASN][1000 genomes]
rs7524511	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs818524	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85187200-85192000	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr1:85187400-85191800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr1:85187400-85192000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr1:85187400-85192000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr1:85187400-85192000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:85187400-85192000	Weak transcription	NHEK	skin
7	chr1:85187400-85192400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr1:85187400-85192600	Weak transcription	Fetal Lung	lung
9	chr1:85187400-85193000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:85187600-85191800	Weak transcription	NHLF	lung
11	chr1:85187600-85192400	Weak transcription	Colon Smooth Muscle	Colon
12	chr1:85187600-85192800	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr1:85189400-85191800	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr1:85189400-85192200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr1:85189600-85192000	Weak transcription	Osteobl	bone
16	chr1:85189800-85191800	Weak transcription	NHDF-Ad	bronchial
17	chr1:85189800-85192400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr1:85190000-85194600	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr1:85190200-85191800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr1:85190600-85199800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr1:85191200-85195400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr1:85191400-85193200	Enhancers	Hela-S3	cervix
23	chr1:85191400-85195400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr1:85191600-85191800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr1:85191600-85191800	Enhancers	Fetal Muscle Leg	muscle

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