The 2.0 version of rSNPBase

Variant report

Variant rs57636989
Chromosome Location chr1:85153287-85153288
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:72 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:85106400-85155400 Weak transcription Sigmoid Colon Sigmoid Colon
2 chr1:85108000-85155000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr1:85124600-85154400 Weak transcription A549 lung
4 chr1:85124800-85153800 Weak transcription Hela-S3 cervix
5 chr1:85125000-85153400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
6 chr1:85125000-85153600 Weak transcription Fetal Kidney kidney
7 chr1:85126200-85154000 Weak transcription Duodenum Smooth Muscle Duodenum
8 chr1:85126400-85154200 Weak transcription Primary T cells fromperipheralblood blood
9 chr1:85126400-85154800 Weak transcription Fetal Muscle Leg muscle
10 chr1:85126400-85155200 Weak transcription Left Ventricle heart
11 chr1:85126600-85153400 Weak transcription Cortex derived primary cultured neurospheres brain
12 chr1:85126600-85154400 Weak transcription Fetal Stomach stomach
13 chr1:85127800-85154400 Weak transcription Brain Germinal Matrix brain
14 chr1:85128200-85153600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
15 chr1:85130400-85153600 Weak transcription NHDF-Ad bronchial
16 chr1:85134400-85153400 Weak transcription NHLF lung
17 chr1:85138000-85154800 Weak transcription HSMMtube muscle
18 chr1:85138400-85153400 Weak transcription Fetal Thymus thymus
19 chr1:85138600-85153400 Weak transcription HSMM muscle
20 chr1:85138800-85155000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
21 chr1:85140000-85154200 Weak transcription Primary T helper naive cells from peripheral blood blood
22 chr1:85140800-85153400 Weak transcription NHEK skin
23 chr1:85141000-85153600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
24 chr1:85141000-85154200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
25 chr1:85141000-85154200 Weak transcription Duodenum Mucosa Duodenum
26 chr1:85141400-85154200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
27 chr1:85141800-85154200 Weak transcription iPS-18 Cell Line embryonic stem cell
28 chr1:85142200-85154200 Weak transcription HUES64 Cell Line embryonic stem cell
29 chr1:85142200-85154200 Weak transcription iPS-20b Cell Line embryonic stem cell
30 chr1:85143600-85153400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
31 chr1:85143600-85154600 Weak transcription Primary B cells from cord blood blood
32 chr1:85143800-85154200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
33 chr1:85144400-85154400 Weak transcription Primary hematopoietic stem cells blood
34 chr1:85146000-85153400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
35 chr1:85150800-85153400 Enhancers Fetal Intestine Small intestine
36 chr1:85151400-85153600 Weak transcription Fetal Heart heart
37 chr1:85151400-85154200 Weak transcription ES-I3 Cell Line embryonic stem cell
38 chr1:85151400-85154400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
39 chr1:85151800-85153600 Enhancers Fetal Brain Male brain
40 chr1:85152000-85154200 Weak transcription H9 Cell Line embryonic stem cell
41 chr1:85152000-85155000 Active TSS Brain Angular Gyrus brain
42 chr1:85152200-85153600 Weak transcription Primary T helper cells fromperipheralblood blood
43 chr1:85152200-85154200 Enhancers Thymus Thymus
44 chr1:85152400-85153400 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
45 chr1:85152400-85154800 Weak transcription Aorta Aorta
46 chr1:85152600-85153600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
47 chr1:85152600-85154000 Flanking Active TSS GM12878-XiMat blood
48 chr1:85152600-85154200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
49 chr1:85152600-85154400 Weak transcription HUES6 Cell Line embryonic stem cell
50 chr1:85152600-85156800 Active TSS Brain Dorsolateral Prefrontal Cortex brain

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Last update: Aug 31, 2015