The 2.0 version of rSNPBase

Variant report

Variant rs2911564
Chromosome Location chr1:85128409-85128410
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:107 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:85087000-85147400 Weak transcription Gastric stomach
2 chr1:85099200-85138200 Weak transcription ES-I3 Cell Line embryonic stem cell
3 chr1:85099400-85131200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
4 chr1:85106200-85140400 Weak transcription NHEK skin
5 chr1:85106400-85155400 Weak transcription Sigmoid Colon Sigmoid Colon
6 chr1:85108000-85155000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
7 chr1:85108200-85128800 Weak transcription GM12878-XiMat blood
8 chr1:85109200-85133000 Weak transcription Pancreas Pancrea
9 chr1:85110800-85129400 Strong transcription Fetal Thymus thymus
10 chr1:85111400-85131400 Weak transcription HSMM muscle
11 chr1:85111800-85152000 Weak transcription Aorta Aorta
12 chr1:85112400-85129000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
13 chr1:85112400-85138200 Strong transcription K562 blood
14 chr1:85112600-85130600 Strong transcription iPS-20b Cell Line embryonic stem cell
15 chr1:85113000-85131200 Weak transcription Muscle Satellite Cultured Cells --
16 chr1:85113200-85138200 Weak transcription iPS-15b Cell Line embryonic stem cell
17 chr1:85113400-85129200 Weak transcription Fetal Heart heart
18 chr1:85113400-85138200 Weak transcription Primary T killer naive cells fromperipheralblood blood
19 chr1:85114400-85130800 Weak transcription Ovary ovary
20 chr1:85114400-85139000 Weak transcription Primary T helper naive cells from peripheral blood blood
21 chr1:85114600-85130800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
22 chr1:85114800-85128600 Strong transcription Dnd41 blood
23 chr1:85114800-85133000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
24 chr1:85114800-85134000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
25 chr1:85115400-85137800 Weak transcription Small Intestine intestine
26 chr1:85115800-85133800 Weak transcription Lung lung
27 chr1:85116200-85128600 Weak transcription Fetal Lung lung
28 chr1:85116200-85135400 Weak transcription HMEC breast
29 chr1:85116400-85134800 Weak transcription Brain Cingulate Gyrus brain
30 chr1:85117800-85137800 Weak transcription Psoas Muscle Psoas
31 chr1:85119200-85134600 Weak transcription Right Ventricle heart
32 chr1:85119400-85131400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
33 chr1:85119400-85136600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
34 chr1:85120200-85128800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
35 chr1:85120400-85128800 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
36 chr1:85120600-85129000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
37 chr1:85120600-85129600 Strong transcription HUES64 Cell Line embryonic stem cell
38 chr1:85120600-85134800 Strong transcription Fetal Intestine Large intestine
39 chr1:85121200-85129600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
40 chr1:85122600-85129600 Weak transcription HepG2 liver
41 chr1:85122800-85136000 Weak transcription Placenta Placenta
42 chr1:85123200-85130000 Strong transcription Primary B cells from cord blood blood
43 chr1:85123600-85139200 Weak transcription Primary T helper naive cells fromperipheralblood blood
44 chr1:85123800-85137400 Weak transcription Rectal Mucosa Donor 31 rectum
45 chr1:85123800-85140600 Weak transcription Brain Substantia Nigra brain
46 chr1:85124200-85129800 Weak transcription Pancreatic Islets Pancreatic Islet
47 chr1:85124200-85131400 Weak transcription Osteobl bone
48 chr1:85124200-85137600 Weak transcription HSMMtube muscle
49 chr1:85124200-85137800 Weak transcription Esophagus oesophagus
50 chr1:85124400-85128600 Weak transcription Primary B cells from peripheral blood blood

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Last update: Aug 31, 2015