The 2.0 version of rSNPBase

Variant report

Variant rs3768242
Chromosome Location chr1:85135053-85135054
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:84 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:85087000-85147400 Weak transcription Gastric stomach
2 chr1:85099200-85138200 Weak transcription ES-I3 Cell Line embryonic stem cell
3 chr1:85106200-85140400 Weak transcription NHEK skin
4 chr1:85106400-85155400 Weak transcription Sigmoid Colon Sigmoid Colon
5 chr1:85108000-85155000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
6 chr1:85111800-85152000 Weak transcription Aorta Aorta
7 chr1:85112400-85138200 Strong transcription K562 blood
8 chr1:85113200-85138200 Weak transcription iPS-15b Cell Line embryonic stem cell
9 chr1:85113400-85138200 Weak transcription Primary T killer naive cells fromperipheralblood blood
10 chr1:85114400-85139000 Weak transcription Primary T helper naive cells from peripheral blood blood
11 chr1:85115400-85137800 Weak transcription Small Intestine intestine
12 chr1:85116200-85135400 Weak transcription HMEC breast
13 chr1:85117800-85137800 Weak transcription Psoas Muscle Psoas
14 chr1:85119400-85136600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
15 chr1:85122800-85136000 Weak transcription Placenta Placenta
16 chr1:85123600-85139200 Weak transcription Primary T helper naive cells fromperipheralblood blood
17 chr1:85123800-85137400 Weak transcription Rectal Mucosa Donor 31 rectum
18 chr1:85123800-85140600 Weak transcription Brain Substantia Nigra brain
19 chr1:85124200-85137600 Weak transcription HSMMtube muscle
20 chr1:85124200-85137800 Weak transcription Esophagus oesophagus
21 chr1:85124400-85138000 Weak transcription HUES6 Cell Line embryonic stem cell
22 chr1:85124400-85144400 Weak transcription Rectal Smooth Muscle rectum
23 chr1:85124400-85145200 Weak transcription Fetal Brain Male brain
24 chr1:85124400-85149200 Weak transcription Brain Angular Gyrus brain
25 chr1:85124600-85135600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
26 chr1:85124600-85135600 Weak transcription Brain Hippocampus Middle brain
27 chr1:85124600-85137000 Weak transcription Primary monocytes fromperipheralblood blood
28 chr1:85124600-85140200 Weak transcription Colon Smooth Muscle Colon
29 chr1:85124600-85154400 Weak transcription A549 lung
30 chr1:85124800-85137000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
31 chr1:85124800-85138800 Weak transcription Primary T helper cells PMA-I stimulated --
32 chr1:85124800-85153800 Weak transcription Hela-S3 cervix
33 chr1:85125000-85153400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
34 chr1:85125000-85153600 Weak transcription Fetal Kidney kidney
35 chr1:85125200-85137800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
36 chr1:85125600-85135200 Weak transcription H1 Cell Line embryonic stem cell
37 chr1:85125600-85141600 Weak transcription H9 Cell Line embryonic stem cell
38 chr1:85126200-85140200 Weak transcription Brain Inferior Temporal Lobe brain
39 chr1:85126200-85154000 Weak transcription Duodenum Smooth Muscle Duodenum
40 chr1:85126400-85135200 Weak transcription Breast Myoepithelial Primary Cells Breast
41 chr1:85126400-85143000 Weak transcription Primary hematopoietic stem cells blood
42 chr1:85126400-85154200 Weak transcription Primary T cells fromperipheralblood blood
43 chr1:85126400-85154800 Weak transcription Fetal Muscle Leg muscle
44 chr1:85126400-85155200 Weak transcription Left Ventricle heart
45 chr1:85126600-85152200 Weak transcription Thymus Thymus
46 chr1:85126600-85153400 Weak transcription Cortex derived primary cultured neurospheres brain
47 chr1:85126600-85154400 Weak transcription Fetal Stomach stomach
48 chr1:85126800-85135600 Weak transcription Fetal Intestine Small intestine
49 chr1:85126800-85141400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
50 chr1:85127800-85140600 Weak transcription Duodenum Mucosa Duodenum

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Last update: Aug 31, 2015