Variant report

Variant	rs2912319
Chromosome Location	chr18:28843890-28843891
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1365290	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16961568	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16961573	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16961579	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16961588	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16961589	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16961590	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16961592	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16961601	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16961605	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16961609	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16961613	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16961641	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16961648	0.93[AMR][1000 genomes]
rs16961679	0.87[AMR][1000 genomes]
rs17728162	0.82[ASN][1000 genomes]
rs17728400	0.88[EUR][1000 genomes]
rs17801172	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17801274	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56697971	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59592286	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59593146	0.88[EUR][1000 genomes]
rs59844732	0.93[AMR][1000 genomes]
rs60220975	0.97[ASN][1000 genomes]
rs62087705	0.86[AMR][1000 genomes]
rs62087706	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62087750	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62087751	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62087754	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62087755	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62087756	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62088669	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62088670	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62088672	0.93[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs62088673	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62088674	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62088676	0.82[EUR][1000 genomes]
rs62088713	0.88[EUR][1000 genomes]
rs6506905	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6506907	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7234474	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7237750	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8096678	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3360998	chr18:28693111-28881812	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28837200-28845400	Weak transcription	Liver	Liver
2	chr18:28841400-28844000	Enhancers	Fetal Intestine Small	intestine
3	chr18:28841600-28844600	Enhancers	Fetal Intestine Large	intestine
4	chr18:28842200-28847400	Weak transcription	GM12878-XiMat	blood
5	chr18:28842400-28849000	Weak transcription	HepG2	liver
6	chr18:28842600-28849200	Weak transcription	Fetal Kidney	kidney
7	chr18:28842800-28844000	Enhancers	Stomach Mucosa	stomach
8	chr18:28843000-28847600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr18:28843800-28844000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr18:28843800-28844000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr18:28843800-28844000	Enhancers	Pancreas	Pancrea

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