Variant report

Variant	rs17728400
Chromosome Location	chr18:28893167-28893168
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUN	chr18:28893099-28893168	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:28886142..28888955-chr18:28891760..28893393,2	MCF-7	breast:

Variant related genes	Relation type
DSG1	TF binding region

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1365290	0.88[EUR][1000 genomes]
rs16961568	0.88[EUR][1000 genomes]
rs16961573	0.88[EUR][1000 genomes]
rs16961579	0.88[EUR][1000 genomes]
rs16961588	0.88[EUR][1000 genomes]
rs16961589	0.88[EUR][1000 genomes]
rs16961590	0.88[EUR][1000 genomes]
rs16961592	0.88[EUR][1000 genomes]
rs16961601	0.88[EUR][1000 genomes]
rs16961605	0.88[EUR][1000 genomes]
rs16961609	0.88[EUR][1000 genomes]
rs16961613	0.88[EUR][1000 genomes]
rs16961641	0.93[EUR][1000 genomes]
rs16961648	0.90[EUR][1000 genomes]
rs16961657	0.90[EUR][1000 genomes]
rs16961679	0.90[EUR][1000 genomes]
rs17801172	0.88[EUR][1000 genomes]
rs17801274	0.88[EUR][1000 genomes]
rs2912319	0.88[EUR][1000 genomes]
rs56697971	1.00[EUR][1000 genomes]
rs59592286	1.00[EUR][1000 genomes]
rs59593146	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59844732	0.90[EUR][1000 genomes]
rs62087706	0.88[EUR][1000 genomes]
rs62087750	0.88[EUR][1000 genomes]
rs62087751	0.88[EUR][1000 genomes]
rs62087754	0.88[EUR][1000 genomes]
rs62087755	1.00[EUR][1000 genomes]
rs62087756	1.00[EUR][1000 genomes]
rs62088669	1.00[EUR][1000 genomes]
rs62088670	1.00[EUR][1000 genomes]
rs62088672	0.87[EUR][1000 genomes]
rs62088673	0.93[EUR][1000 genomes]
rs62088674	0.93[EUR][1000 genomes]
rs62088676	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62088713	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6506905	0.88[EUR][1000 genomes]
rs6506907	0.88[EUR][1000 genomes]
rs7234474	0.88[EUR][1000 genomes]
rs7237750	0.88[EUR][1000 genomes]
rs8096678	0.88[EUR][1000 genomes]
rs9966811	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066692	chr18:28856066-29190505	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv543674	chr18:28856066-29190505	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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