Variant report

Variant	rs8096678
Chromosome Location	chr18:28843123-28843124
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1365290	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16961568	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16961573	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16961579	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16961588	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16961589	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16961590	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16961592	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16961601	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16961605	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16961609	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16961613	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16961641	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs16961648	1.00[CEU][hapmap]
rs16961657	1.00[CEU][hapmap]
rs16961679	1.00[CEU][hapmap]
rs17728162	0.83[ASN][1000 genomes]
rs17728400	0.88[EUR][1000 genomes]
rs17801172	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17801274	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2912319	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56697971	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59592286	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59593146	0.88[EUR][1000 genomes]
rs60220975	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs62087706	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62087750	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62087751	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62087754	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62087755	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62087756	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62088669	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62088670	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62088672	0.95[ASN][1000 genomes]
rs62088673	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62088674	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62088676	0.82[EUR][1000 genomes]
rs62088713	0.88[EUR][1000 genomes]
rs6506905	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6506907	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7234474	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7237750	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9966811	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3360998	chr18:28693111-28881812	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28837200-28845400	Weak transcription	Liver	Liver
2	chr18:28841400-28844000	Enhancers	Fetal Intestine Small	intestine
3	chr18:28841600-28844600	Enhancers	Fetal Intestine Large	intestine
4	chr18:28842200-28843800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr18:28842200-28847400	Weak transcription	GM12878-XiMat	blood
6	chr18:28842400-28849000	Weak transcription	HepG2	liver
7	chr18:28842600-28849200	Weak transcription	Fetal Kidney	kidney
8	chr18:28842800-28843200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr18:28842800-28843400	Enhancers	Small Intestine	intestine
10	chr18:28842800-28844000	Enhancers	Stomach Mucosa	stomach
11	chr18:28843000-28843800	Weak transcription	Pancreas	Pancrea
12	chr18:28843000-28847600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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