Variant report

Variant	rs2920871
Chromosome Location	chr2:55319998-55319999
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:55319141..55322072-chr2:55348443..55351423,2	K562	blood:
2	chr2:55317491..55320389-chr2:55353097..55355543,2	K562	blood:
3	chr2:55317970..55321435-chr2:55328777..55332297,3	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10179594	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs2920863	1.00[CHB][hapmap]
rs2920872	0.90[ASN][1000 genomes]
rs2920881	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2920883	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs2920884	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs2920897	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs2920898	0.85[CHB][hapmap]
rs2968789	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs2968807	0.85[ASN][1000 genomes]
rs2968810	0.90[ASN][1000 genomes]
rs2968812	1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs2968813	1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs2968814	1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs2968829	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2972067	0.80[ASN][1000 genomes]
rs2972084	0.88[ASN][1000 genomes]

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55312000-55321200	Weak transcription	Lung	lung
2	chr2:55315400-55320200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr2:55315400-55320200	Weak transcription	Brain Angular Gyrus	brain
4	chr2:55315400-55320200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr2:55315400-55320600	Weak transcription	Brain Hippocampus Middle	brain
6	chr2:55315400-55320800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr2:55315400-55323600	Weak transcription	HSMMtube	muscle
8	chr2:55316000-55320000	Weak transcription	Osteobl	bone
9	chr2:55316000-55320600	Weak transcription	Brain Substantia Nigra	brain
10	chr2:55316000-55322800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr2:55316000-55323800	Weak transcription	NHDF-Ad	bronchial
12	chr2:55316800-55327200	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr2:55317200-55323800	Weak transcription	Fetal Muscle Leg	muscle
14	chr2:55317400-55322000	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr2:55318200-55320000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr2:55318400-55320000	Weak transcription	NHLF	lung
17	chr2:55318400-55320600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr2:55318400-55323600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr2:55318400-55323600	Weak transcription	Hela-S3	cervix
20	chr2:55318400-55329600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr2:55318600-55322800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr2:55319200-55321000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr2:55319400-55320000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr2:55319400-55320200	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr2:55319400-55320200	Enhancers	Stomach Mucosa	stomach
26	chr2:55319400-55321000	Enhancers	HMEC	breast
27	chr2:55319400-55321600	Enhancers	K562	blood
28	chr2:55319400-55321800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr2:55319400-55321800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr2:55319400-55322200	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr2:55319600-55320000	Enhancers	Primary T cells fromperipheralblood	blood
32	chr2:55319600-55320000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr2:55319600-55320000	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr2:55319600-55320000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
35	chr2:55319600-55320000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
36	chr2:55319600-55320000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
37	chr2:55319600-55320000	Enhancers	Rectal Mucosa Donor 29	rectum
38	chr2:55319600-55320200	Enhancers	Primary B cells from cord blood	blood
39	chr2:55319600-55320200	Enhancers	Primary T helper cells PMA-I stimulated	--
40	chr2:55319600-55321600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr2:55319600-55322000	Enhancers	NHEK	skin
42	chr2:55319600-55322200	Enhancers	HUVEC	blood vessel
43	chr2:55319600-55322400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr2:55319800-55320000	Enhancers	ES-I3 Cell Line	embryonic stem cell
45	chr2:55319800-55320000	Enhancers	Primary hematopoietic stem cells	blood
46	chr2:55319800-55321000	Enhancers	Fetal Heart	heart
47	chr2:55319800-55321600	Enhancers	A549	lung
48	chr2:55319800-55324600	Weak transcription	Fetal Intestine Small	intestine

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