Variant report

Variant	rs2968829
Chromosome Location	chr2:55295908-55295909
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:55276234..55278687-chr2:55294375..55296735,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115310	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10179594	1.00[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs2920839	0.84[ASN][1000 genomes]
rs2920861	0.88[ASN][1000 genomes]
rs2920863	1.00[CHB][hapmap]
rs2920879	0.80[AFR][1000 genomes]
rs2920881	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2920883	1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs2920884	1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs2920889	0.88[ASN][1000 genomes]
rs2920890	0.88[ASN][1000 genomes]
rs2920897	1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs2920898	0.85[CHB][hapmap]
rs2968789	1.00[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs2968792	0.88[ASN][1000 genomes]
rs2968812	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs2968813	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs2968814	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs2968823	0.88[ASN][1000 genomes]
rs2968824	0.88[ASN][1000 genomes]
rs2968826	0.88[ASN][1000 genomes]
rs2968831	0.86[ASN][1000 genomes]
rs2972065	0.88[ASN][1000 genomes]
rs2972066	0.84[ASN][1000 genomes]
rs2972067	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2972069	0.88[ASN][1000 genomes]
rs2972073	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2972074	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2972076	0.86[ASN][1000 genomes]
rs7559248	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874155	chr2:55205262-55307646	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55293000-55298400	Weak transcription	K562	blood
2	chr2:55295600-55296000	Weak transcription	Fetal Heart	heart
3	chr2:55295800-55296200	Enhancers	Fetal Intestine Small	intestine

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