The 2.0 version of rSNPBase

Variant report

Variant rs2968792
Chromosome Location chr2:55280790-55280791
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:61 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:55278200-55282600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr2:55278200-55288800 Weak transcription Lung lung
3 chr2:55278600-55281000 Weak transcription Placenta Amnion Placenta Amnion
4 chr2:55278600-55281600 Enhancers Primary T helper naive cells fromperipheralblood blood
5 chr2:55278600-55282000 Enhancers Primary T helper 17 cells PMA-I stimulated --
6 chr2:55278800-55282200 Enhancers Primary T helper memory cells from peripheral blood 2 blood
7 chr2:55278800-55283200 Weak transcription Brain Inferior Temporal Lobe brain
8 chr2:55278800-55283200 Weak transcription Fetal Adrenal Gland Adrenal Gland
9 chr2:55278800-55288600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
10 chr2:55278800-55290800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
11 chr2:55279000-55282000 Enhancers Primary B cells from peripheral blood blood
12 chr2:55279000-55282400 Enhancers Primary T helper cells fromperipheralblood blood
13 chr2:55279000-55283200 Weak transcription H1 Cell Line embryonic stem cell
14 chr2:55279000-55287000 Weak transcription ES-WA7 Cell Line embryonic stem cell
15 chr2:55279000-55290600 Weak transcription Brain Cingulate Gyrus brain
16 chr2:55279400-55281000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
17 chr2:55279400-55281000 Weak transcription Thymus Thymus
18 chr2:55279400-55282000 Enhancers Primary T helper memory cells from peripheral blood 1 blood
19 chr2:55279400-55282200 Enhancers Primary T regulatory cells fromperipheralblood blood
20 chr2:55279400-55283000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
21 chr2:55279400-55283200 Weak transcription Osteobl bone
22 chr2:55279400-55283400 Weak transcription HUES48 Cell Line embryonic stem cell
23 chr2:55279400-55283400 Weak transcription Brain Hippocampus Middle brain
24 chr2:55279400-55287600 Weak transcription Duodenum Smooth Muscle Duodenum
25 chr2:55279600-55281400 Enhancers Primary T helper cells PMA-I stimulated --
26 chr2:55279600-55281400 Weak transcription Fetal Kidney kidney
27 chr2:55279600-55283000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
28 chr2:55279600-55283200 Weak transcription iPS-20b Cell Line embryonic stem cell
29 chr2:55279800-55280800 Enhancers Breast Myoepithelial Primary Cells Breast
30 chr2:55279800-55280800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
31 chr2:55279800-55280800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
32 chr2:55279800-55281400 Enhancers Primary T cells from cord blood blood
33 chr2:55279800-55282000 Enhancers Primary T helper naive cells from peripheral blood blood
34 chr2:55279800-55282000 Enhancers Primary T killer memory cells from peripheral blood blood
35 chr2:55279800-55282600 Enhancers Primary B cells from cord blood blood
36 chr2:55279800-55283200 Weak transcription ES-I3 Cell Line embryonic stem cell
37 chr2:55279800-55283200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
38 chr2:55279800-55283200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
39 chr2:55279800-55283200 Weak transcription NHDF-Ad bronchial
40 chr2:55279800-55284200 Weak transcription Fetal Intestine Small intestine
41 chr2:55279800-55284400 Weak transcription Fetal Heart heart
42 chr2:55279800-55287400 Weak transcription HSMM muscle
43 chr2:55280000-55280800 Enhancers GM12878-XiMat blood
44 chr2:55280000-55281000 Enhancers Primary hematopoietic stem cells short term culture blood
45 chr2:55280000-55281200 Enhancers Primary hematopoietic stem cells blood
46 chr2:55280000-55281600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
47 chr2:55280000-55281800 Enhancers Dnd41 blood
48 chr2:55280000-55282800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
49 chr2:55280000-55283000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
50 chr2:55280000-55283200 Weak transcription HMEC breast

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Last update: Aug 31, 2015