Variant report

Variant	rs2920892
Chromosome Location	chr2:55265203-55265204
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:55255745..55260236-chr2:55263069..55266549,5	K562	blood:
2	chr2:55256384..55258349-chr2:55263077..55265384,2	K562	blood:
3	chr2:55258610..55260236-chr2:55264059..55265743,2	K562	blood:
4	chr2:55261058..55265438-chr2:55268460..55270489,4	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs13031431	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs17046579	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17046586	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17046589	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1822617	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2255026	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2255393	0.85[CHB][hapmap]
rs2580768	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2580769	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2580770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2580771	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2588513	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2588515	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2588516	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2588522	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2919126	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2920859	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2968788	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2972063	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2972092	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34352825	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34378852	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34928331	0.93[ASN][1000 genomes]
rs35981204	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4672003	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6545464	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6545465	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6734314	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6739210	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72795434	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7355716	0.84[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874155	chr2:55205262-55307646	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55237600-55272600	Weak transcription	Fetal Stomach	stomach
2	chr2:55241000-55272400	Weak transcription	Fetal Kidney	kidney
3	chr2:55245600-55265600	Weak transcription	Stomach Mucosa	stomach
4	chr2:55250400-55271000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:55250400-55274000	Weak transcription	Pancreas	Pancrea
6	chr2:55253400-55273000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr2:55254200-55269800	Weak transcription	Aorta	Aorta
8	chr2:55254200-55270400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr2:55255400-55272600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr2:55255400-55272600	Weak transcription	Fetal Intestine Small	intestine
11	chr2:55256400-55266600	Weak transcription	Left Ventricle	heart
12	chr2:55256400-55270400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr2:55259000-55265600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr2:55259000-55267400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr2:55259000-55272800	Weak transcription	Small Intestine	intestine
16	chr2:55259200-55272800	Weak transcription	Fetal Heart	heart
17	chr2:55259400-55275200	Weak transcription	Esophagus	oesophagus
18	chr2:55260000-55265600	Weak transcription	NHEK	skin
19	chr2:55260800-55266000	Weak transcription	Adipose Nuclei	Adipose
20	chr2:55260800-55266200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr2:55260800-55266600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr2:55260800-55270400	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr2:55260800-55271200	Weak transcription	Lung	lung
24	chr2:55260800-55271200	Weak transcription	Right Atrium	heart
25	chr2:55260800-55272000	Weak transcription	NH-A	brain
26	chr2:55260800-55272400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr2:55260800-55273200	Weak transcription	Psoas Muscle	Psoas
28	chr2:55261200-55273000	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr2:55261400-55272800	Weak transcription	Thymus	Thymus
30	chr2:55261600-55265800	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr2:55261600-55266000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr2:55261600-55266000	Weak transcription	Brain Cingulate Gyrus	brain
33	chr2:55261600-55266200	Weak transcription	Brain Angular Gyrus	brain
34	chr2:55261600-55266600	Weak transcription	Fetal Thymus	thymus
35	chr2:55261600-55269400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr2:55261600-55271200	Weak transcription	Ovary	ovary
37	chr2:55262000-55266600	ZNF genes & repeats	A549	lung
38	chr2:55262600-55270200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr2:55262800-55267600	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr2:55263000-55265400	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr2:55263000-55266000	Weak transcription	Hela-S3	cervix
42	chr2:55263800-55265600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr2:55263800-55266200	Genic enhancers	Muscle Satellite Cultured Cells	--
44	chr2:55263800-55266800	ZNF genes & repeats	GM12878-XiMat	blood
45	chr2:55263800-55267200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
46	chr2:55264000-55265600	Enhancers	HUVEC	blood vessel
47	chr2:55264000-55266200	Enhancers	HepG2	liver
48	chr2:55264200-55265600	Weak transcription	Primary T cells from cord blood	blood
49	chr2:55264200-55265800	Weak transcription	Fetal Muscle Leg	muscle
50	chr2:55264200-55267600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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