Variant report

Variant	rs35981204
Chromosome Location	chr2:55259748-55259749
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:55253309..55255989-chr2:55259127..55262322,3	MCF-7	breast:
2	chr2:55255815..55260220-chr2:55273453..55278520,8	MCF-7	breast:
3	chr2:55252582..55260799-chr2:55274165..55279100,17	MCF-7	breast:
4	chr2:55257553..55263983-chr2:55266645..55270936,7	K562	blood:
5	chr2:55255745..55260236-chr2:55263069..55266549,5	K562	blood:
6	chr2:55258298..55260902-chr2:55265959..55268145,3	MCF-7	breast:
7	chr2:55215664..55218100-chr2:55259563..55261709,2	K562	blood:
8	chr2:55258610..55260236-chr2:55264059..55265743,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000115310	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs13031431	0.94[ASN][1000 genomes]
rs17046579	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17046586	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17046589	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1822617	0.93[ASN][1000 genomes]
rs2255026	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2580768	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2580769	0.89[ASN][1000 genomes]
rs2580770	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2580771	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2588515	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2588516	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2588522	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2919126	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2920859	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2920892	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2968788	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2972063	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2972092	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34352825	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34378852	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34928331	0.93[ASN][1000 genomes]
rs4672003	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6545464	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6545465	0.88[ASN][1000 genomes]
rs6734314	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6739210	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72795434	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874155	chr2:55205262-55307646	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55237600-55272600	Weak transcription	Fetal Stomach	stomach
2	chr2:55241000-55272400	Weak transcription	Fetal Kidney	kidney
3	chr2:55243000-55262400	Weak transcription	Hela-S3	cervix
4	chr2:55243800-55259800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:55245600-55265600	Weak transcription	Stomach Mucosa	stomach
6	chr2:55246800-55259800	Weak transcription	NH-A	brain
7	chr2:55250000-55260000	Weak transcription	Gastric	stomach
8	chr2:55250400-55271000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr2:55250400-55274000	Weak transcription	Pancreas	Pancrea
10	chr2:55252600-55261400	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr2:55253400-55273000	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr2:55253800-55260400	Weak transcription	Duodenum Mucosa	Duodenum
13	chr2:55253800-55260600	Weak transcription	Right Atrium	heart
14	chr2:55253800-55261400	Weak transcription	Fetal Muscle Trunk	muscle
15	chr2:55254200-55269800	Weak transcription	Aorta	Aorta
16	chr2:55254200-55270400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr2:55254400-55262600	Enhancers	Brain Hippocampus Middle	brain
18	chr2:55254600-55259800	Weak transcription	Primary B cells from cord blood	blood
19	chr2:55254600-55259800	Weak transcription	Thymus	Thymus
20	chr2:55254600-55260000	Weak transcription	Fetal Thymus	thymus
21	chr2:55254600-55260600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr2:55254800-55260000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr2:55254800-55260400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr2:55254800-55265000	Enhancers	Brain Substantia Nigra	brain
25	chr2:55255000-55260600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr2:55255200-55261200	Weak transcription	HUVEC	blood vessel
27	chr2:55255400-55259800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr2:55255400-55259800	Weak transcription	Dnd41	blood
29	chr2:55255400-55260000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr2:55255400-55260400	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr2:55255400-55272600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr2:55255400-55272600	Weak transcription	Fetal Intestine Small	intestine
33	chr2:55256000-55260200	Weak transcription	Primary T cells from cord blood	blood
34	chr2:55256000-55260200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr2:55256000-55260200	Weak transcription	Stomach Smooth Muscle	stomach
36	chr2:55256200-55260000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr2:55256400-55266600	Weak transcription	Left Ventricle	heart
38	chr2:55256400-55270400	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr2:55256600-55259800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr2:55256600-55260200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr2:55256600-55262200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr2:55256600-55264000	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr2:55256600-55265200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr2:55256800-55260400	Weak transcription	HepG2	liver
45	chr2:55256800-55264200	Weak transcription	HSMMtube	muscle
46	chr2:55257000-55262400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr2:55257200-55259800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr2:55257200-55260000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr2:55257600-55260600	Enhancers	Colon Smooth Muscle	Colon
50	chr2:55257600-55260600	Enhancers	Duodenum Smooth Muscle	Duodenum

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