Variant report

Variant	rs292106
Chromosome Location	chr11:86084069-86084070
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11234628	0.83[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs148574	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs167109	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17149021	0.84[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs292097	0.94[CEU][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs292098	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs292107	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs292111	0.94[CEU][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86080600-86084200	Enhancers	HMEC	breast
2	chr11:86081600-86084600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr11:86081800-86084400	Enhancers	NHEK	skin
4	chr11:86082400-86085400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:86082600-86084400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:86083000-86085000	Weak transcription	HUVEC	blood vessel
7	chr11:86083000-86085400	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr11:86083000-86085600	Weak transcription	Fetal Brain Female	brain
9	chr11:86083000-86085600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr11:86083000-86085800	Weak transcription	Esophagus	oesophagus
11	chr11:86083200-86085600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr11:86084000-86085000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:86084000-86085200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links