Variant report

Variant	rs17149021
Chromosome Location	chr11:86095118-86095119
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11234627	0.83[CHD][hapmap]
rs11234628	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs148574	0.86[EUR][1000 genomes]
rs167109	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs292097	0.87[EUR][1000 genomes]
rs292098	0.85[EUR][1000 genomes]
rs292106	0.84[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs292107	0.87[EUR][1000 genomes]
rs292111	0.87[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17149021	IAPP	trans	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86086000-86102200	Weak transcription	Left Ventricle	heart
2	chr11:86086000-86106200	Weak transcription	Aorta	Aorta
3	chr11:86089400-86099400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:86089800-86098800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:86093800-86095200	Weak transcription	Fetal Brain Male	brain
6	chr11:86095000-86095200	Enhancers	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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