Variant report

Variant	rs2921746
Chromosome Location	chr8:117925136-117925137
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1584218	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2921724	1.00[EUR][1000 genomes]
rs2921728	0.97[ASN][1000 genomes]
rs2921737	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2921749	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2921754	0.85[AMR][1000 genomes]
rs2921757	0.84[AMR][1000 genomes]
rs2921770	0.84[AMR][1000 genomes]
rs2921772	0.84[AMR][1000 genomes]
rs2921774	0.84[AMR][1000 genomes]
rs2921775	0.84[AMR][1000 genomes]
rs3020136	0.84[AMR][1000 genomes]
rs3020140	0.84[AMR][1000 genomes]
rs3020162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3020169	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3020170	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3020172	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3020173	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3020174	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv831434	chr8:117784467-117977825	Flanking Active TSS Genic enhancers Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:117924600-117925600	Enhancers	Placenta	Placenta
2	chr8:117924600-117925600	Enhancers	Placenta Amnion	Placenta Amnion
3	chr8:117925000-117925200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:117925000-117925200	Enhancers	HepG2	liver
5	chr8:117925000-117925600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links