Variant report
| Variant | rs2921749 |
|---|---|
| Chromosome Location | chr8:117922301-117922302 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000147679 | Chromatin interaction |
| ENSG00000147677 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs1584218 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2921724 | 1.00[EUR][1000 genomes] |
| rs2921728 | 0.95[ASN][1000 genomes] |
| rs2921737 | 1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2921746 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2921754 | 0.85[AMR][1000 genomes] |
| rs2921757 | 0.84[AMR][1000 genomes] |
| rs2921770 | 0.84[AMR][1000 genomes] |
| rs2921772 | 0.84[AMR][1000 genomes] |
| rs2921774 | 0.84[AMR][1000 genomes] |
| rs2921775 | 0.84[AMR][1000 genomes] |
| rs3020136 | 0.84[AMR][1000 genomes] |
| rs3020140 | 0.84[AMR][1000 genomes] |
| rs3020162 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3020169 | 1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3020170 | 0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3020172 | 1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3020173 | 0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3020174 | 0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530386 | chr8:117509968-118391406 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
| 2 | nsv831434 | chr8:117784467-117977825 | Flanking Active TSS Genic enhancers Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
