Variant report

Variant	rs2932270
Chromosome Location	chr3:87858977-87858978
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1156395	0.83[ASN][1000 genomes]
rs12485486	0.85[ASN][1000 genomes]
rs12490277	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12633947	0.98[ASN][1000 genomes]
rs13316021	0.81[ASN][1000 genomes]
rs1489777	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1489778	0.98[ASN][1000 genomes]
rs1602152	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1602154	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17025015	0.97[ASN][1000 genomes]
rs1847309	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2010539	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2029437	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2130351	0.98[ASN][1000 genomes]
rs2171821	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs28872274	0.81[ASN][1000 genomes]
rs2919238	0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2919240	0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2919242	0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2919248	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2932281	0.87[ASN][1000 genomes]
rs2932282	0.88[ASN][1000 genomes]
rs2932296	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2932298	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2932309	0.96[ASN][1000 genomes]
rs2932310	0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4859104	0.87[CHD][hapmap];0.85[GIH][hapmap]
rs55788242	0.82[ASN][1000 genomes]
rs57844811	0.98[ASN][1000 genomes]
rs67303034	0.80[ASN][1000 genomes]
rs6779623	0.82[ASN][1000 genomes]
rs7619960	0.82[ASN][1000 genomes]
rs923475	0.86[ASN][1000 genomes]
rs923477	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9867061	0.87[CHB][hapmap];0.81[CHD][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv590918	chr3:87323334-87910931	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv877143	chr3:87630433-87860130	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv834756	chr3:87763793-87938179	Bivalent/Poised TSS Strong transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1009981	chr3:87821573-88003956	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv536634	chr3:87821573-88003956	Bivalent/Poised TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:87850800-87859200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr3:87851000-87860800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr3:87856200-87859400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:87856200-87860800	Weak transcription	Monocytes-CD14+_RO01746	blood

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