Variant report

Variant	rs1156395
Chromosome Location	chr3:87938651-87938652
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1156394	0.81[AMR][1000 genomes]
rs12490277	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12633947	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1465648	0.81[AFR][1000 genomes]
rs1489777	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1489778	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1503425	0.88[AFR][1000 genomes]
rs1503426	0.88[AFR][1000 genomes]
rs1503428	0.91[AFR][1000 genomes]
rs1503430	0.84[AFR][1000 genomes]
rs1602152	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1602154	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1604701	0.88[AFR][1000 genomes]
rs17025015	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1847309	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2010539	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2029437	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2062811	0.88[AFR][1000 genomes]
rs2130351	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2171821	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2915288	0.88[AFR][1000 genomes]
rs2919238	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2919240	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2919242	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2919248	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2919267	0.88[AFR][1000 genomes]
rs2932270	0.83[ASN][1000 genomes]
rs2932274	0.82[AFR][1000 genomes]
rs2932277	0.81[AFR][1000 genomes]
rs2932281	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2932282	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2932296	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2932298	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2932301	0.89[AFR][1000 genomes]
rs2932309	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2932310	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2938265	0.88[AFR][1000 genomes]
rs2938268	0.84[AFR][1000 genomes]
rs2938270	0.81[AFR][1000 genomes]
rs57844811	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7619960	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs923475	0.88[EUR][1000 genomes]
rs923477	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9867061	0.83[CHB][hapmap]
rs989563	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009981	chr3:87821573-88003956	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv536634	chr3:87821573-88003956	Bivalent/Poised TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv460757	chr3:87863280-87949733	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv590919	chr3:87863280-87949733	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv834758	chr3:87867363-88014975	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv2760794	chr3:87932310-87953742	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:87936400-87942600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr3:87937600-87941400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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