Variant report

Variant	rs57844811
Chromosome Location	chr3:87858898-87858899
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1156395	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12485486	0.87[ASN][1000 genomes]
rs12488028	0.81[ASN][1000 genomes]
rs12490277	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12633947	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1489777	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1489778	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1602152	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1602154	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17025015	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1847309	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2010539	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2029437	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2130351	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2171821	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2919238	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2919240	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2919242	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2919248	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2932270	0.98[ASN][1000 genomes]
rs2932281	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2932282	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2932296	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2932298	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2932309	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2932310	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55788242	0.80[ASN][1000 genomes]
rs67303034	0.82[ASN][1000 genomes]
rs6779623	0.80[ASN][1000 genomes]
rs7619960	0.89[EUR][1000 genomes]
rs923475	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs923477	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv590918	chr3:87323334-87910931	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv877143	chr3:87630433-87860130	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv834756	chr3:87763793-87938179	Bivalent/Poised TSS Strong transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1009981	chr3:87821573-88003956	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv536634	chr3:87821573-88003956	Bivalent/Poised TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:87850800-87859200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr3:87851000-87860800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr3:87856200-87859400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:87856200-87860800	Weak transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links