Variant report

Variant	rs2940707
Chromosome Location	chr10:49989792-49989793
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10508908	0.81[JPT][hapmap]
rs10776643	0.82[JPT][hapmap]
rs11101469	0.82[JPT][hapmap]
rs11101470	0.85[JPT][hapmap]
rs11595065	0.85[JPT][hapmap]
rs11598212	0.82[JPT][hapmap]
rs1904603	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2170132	0.95[YRI][hapmap]
rs2663031	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2663043	0.81[JPT][hapmap]
rs2663053	0.80[EUR][1000 genomes]
rs2683610	0.86[JPT][hapmap]
rs2928393	0.80[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2928401	1.00[YRI][hapmap]
rs2947344	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2947345	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2947347	0.89[ASN][1000 genomes]
rs4838648	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7904251	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895374	chr10:49969556-49990081	Strong transcription Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49967600-50000000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
2	chr10:49967800-50006800	Strong transcription	Primary B cells from peripheral blood	blood
3	chr10:49969400-49989800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:49977000-49990400	Weak transcription	Fetal Brain Male	brain
5	chr10:49979600-49990600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:49979800-49991000	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr10:49979800-49992400	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr10:49980000-49990400	Weak transcription	Right Atrium	heart
9	chr10:49981200-49991000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr10:49981400-50007200	Strong transcription	Primary B cells from cord blood	blood
11	chr10:49982000-49992200	Strong transcription	Primary neutrophils fromperipheralblood	blood
12	chr10:49982400-49991400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr10:49982400-50000800	Weak transcription	Fetal Thymus	thymus
14	chr10:49982600-50006800	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr10:49985600-49999800	Weak transcription	Duodenum Mucosa	Duodenum
16	chr10:49986400-49990200	Weak transcription	Fetal Lung	lung
17	chr10:49986600-49990400	Weak transcription	Lung	lung
18	chr10:49988800-49997600	Weak transcription	Spleen	Spleen
19	chr10:49989000-49990000	Weak transcription	GM12878-XiMat	blood
20	chr10:49989200-49990200	Weak transcription	Primary hematopoietic stem cells	blood

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