Variant report

Variant	rs4838648
Chromosome Location	chr10:49992689-49992690
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs2127590	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2170132	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2620888	0.84[ASN][1000 genomes]
rs2620889	0.81[ASN][1000 genomes]
rs2620903	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2663031	0.84[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs2663035	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2663044	0.89[ASN][1000 genomes]
rs2663053	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2928393	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2928401	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2940704	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2940707	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2947344	0.88[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs2947345	0.88[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs6537576	0.89[ASN][1000 genomes]
rs726786	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49967600-50000000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
2	chr10:49967800-50006800	Strong transcription	Primary B cells from peripheral blood	blood
3	chr10:49981400-50007200	Strong transcription	Primary B cells from cord blood	blood
4	chr10:49982400-50000800	Weak transcription	Fetal Thymus	thymus
5	chr10:49982600-50006800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr10:49985600-49999800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr10:49988800-49997600	Weak transcription	Spleen	Spleen
8	chr10:49990600-49992800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr10:49990600-49993600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:49990600-49999000	Weak transcription	Lung	lung
11	chr10:49990800-49993400	Weak transcription	GM12878-XiMat	blood
12	chr10:49991000-49994600	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr10:49991000-49996600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr10:49991400-49993800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:49992000-49995200	Weak transcription	Fetal Lung	lung
16	chr10:49992200-49994600	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr10:49992400-49994600	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr10:49992600-49999800	Weak transcription	Small Intestine	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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