Variant report

Variant	rs726786
Chromosome Location	chr10:49998569-49998570
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49995916..49998699-chr10:49999856..50002398,4	K562	blood:
2	chr10:49997425..50000920-chr10:50010658..50015147,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000128815	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10776647	0.89[JPT][hapmap]
rs10776648	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs10857655	0.89[JPT][hapmap]
rs11101511	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs11101529	0.89[JPT][hapmap]
rs11101530	0.89[JPT][hapmap]
rs11101531	0.88[JPT][hapmap]
rs1904596	0.89[JPT][hapmap]
rs1904603	0.81[TSI][hapmap]
rs2002588	0.89[JPT][hapmap]
rs2127590	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2170132	0.85[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.96[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2448539	0.93[CHB][hapmap];0.88[JPT][hapmap]
rs2448540	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs2448545	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs2457214	0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap]
rs2620888	0.93[CHB][hapmap];0.83[CHD][hapmap];0.89[JPT][hapmap]
rs2620889	0.82[JPT][hapmap]
rs2620891	0.89[JPT][hapmap]
rs2620896	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs2620898	0.89[JPT][hapmap]
rs2620903	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2620904	0.89[JPT][hapmap]
rs2663031	0.90[LWK][hapmap]
rs2663035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2663044	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2663053	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2928393	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2928401	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2940704	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2943244	0.89[JPT][hapmap]
rs2947344	0.90[LWK][hapmap];0.82[TSI][hapmap]
rs2947345	0.90[LWK][hapmap];0.82[TSI][hapmap]
rs3747872	0.89[JPT][hapmap]
rs3747874	0.89[JPT][hapmap]
rs3747875	0.89[JPT][hapmap]
rs3860188	0.89[JPT][hapmap]
rs4838648	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6537576	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs6537580	0.84[CHB][hapmap]
rs7079766	0.89[JPT][hapmap]
rs7900138	0.89[JPT][hapmap]
rs7913005	0.89[JPT][hapmap]
rs877819	0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs726786	WDFY4	cis	cerebellum	SCAN

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49967600-50000000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
2	chr10:49967800-50006800	Strong transcription	Primary B cells from peripheral blood	blood
3	chr10:49981400-50007200	Strong transcription	Primary B cells from cord blood	blood
4	chr10:49982400-50000800	Weak transcription	Fetal Thymus	thymus
5	chr10:49982600-50006800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr10:49985600-49999800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr10:49990600-49999000	Weak transcription	Lung	lung
8	chr10:49992600-49999800	Weak transcription	Small Intestine	intestine
9	chr10:49992800-50005200	Strong transcription	Primary hematopoietic stem cells	blood
10	chr10:49993400-50002200	Strong transcription	GM12878-XiMat	blood
11	chr10:49993600-50001000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:49993800-50005600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr10:49995400-50000000	Weak transcription	Colonic Mucosa	Colon
14	chr10:49996200-49999200	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr10:49996200-50000200	Weak transcription	Brain Hippocampus Middle	brain
16	chr10:49996600-49999200	Genic enhancers	Primary monocytes fromperipheralblood	blood
17	chr10:49996600-50005400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr10:49997200-49999600	Genic enhancers	Primary neutrophils fromperipheralblood	blood
19	chr10:49997600-50000600	Strong transcription	Spleen	Spleen
20	chr10:49998000-49998800	Enhancers	Esophagus	oesophagus
21	chr10:49998200-49999200	Genic enhancers	Monocytes-CD14+_RO01746	blood
22	chr10:49998200-49999600	Weak transcription	Fetal Lung	lung

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