Variant report

Variant	rs11101511
Chromosome Location	chr10:50019099-50019100
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:50018526..50021577-chr10:50026027..50031410,4	MCF-7	breast:
2	chr10:50011096..50015039-chr10:50015649..50020097,7	MCF-7	breast:
3	chr10:49972674..49975169-chr10:50017821..50020027,2	MCF-7	breast:
4	chr10:50009310..50017840-chr10:50018505..50026491,17	MCF-7	breast:

Variant related genes	Relation type
ENSG00000128815	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10776647	0.83[CHB][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes]
rs10776648	0.92[CHB][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes]
rs10776649	0.80[EUR][1000 genomes]
rs10857655	0.92[CEU][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11101529	0.86[CHB][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes]
rs11101530	0.91[CEU][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11101531	0.91[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11101532	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1904596	0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs2002587	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2002588	0.92[CEU][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2127590	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs2170132	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs2250389	0.97[ASN][1000 genomes]
rs2448539	0.85[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs2448540	0.96[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2448545	0.92[CHB][hapmap];0.82[JPT][hapmap];0.93[ASN][1000 genomes]
rs2457214	0.95[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2620888	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs2620891	0.83[CHB][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes]
rs2620896	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2620898	0.85[CHB][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes]
rs2620904	0.84[CHB][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes]
rs2663044	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs2663051	0.93[ASN][1000 genomes]
rs2928401	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs2940727	0.88[ASN][1000 genomes]
rs2943244	0.88[JPT][hapmap]
rs35932562	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3747872	0.91[CEU][hapmap];0.83[CHB][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3747873	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3747874	0.83[CHB][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes]
rs3747875	0.91[CEU][hapmap];0.83[CHB][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3747877	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3860188	0.95[CEU][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3860189	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3860190	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6537576	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs6537580	0.92[CEU][hapmap];0.86[CHB][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7079766	0.92[CEU][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7093474	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs726786	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs7900138	0.91[CEU][hapmap];0.83[CHB][hapmap];0.88[JPT][hapmap]
rs7913005	0.91[CEU][hapmap];0.83[CHB][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7919656	0.90[ASN][1000 genomes]
rs877819	0.91[CEU][hapmap];0.83[CHB][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs877820	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs877821	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3446258	chr10:50015246-50019644	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50005200-50026800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:50009600-50028000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:50013200-50023800	Strong transcription	GM12878-XiMat	blood
4	chr10:50013600-50028200	Strong transcription	Primary B cells from peripheral blood	blood
5	chr10:50013600-50061000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr10:50014200-50030000	Weak transcription	Right Atrium	heart
7	chr10:50014600-50019400	Weak transcription	Brain Substantia Nigra	brain
8	chr10:50014600-50019800	Weak transcription	Left Ventricle	heart
9	chr10:50014600-50020800	Strong transcription	Primary hematopoietic stem cells	blood
10	chr10:50014600-50021800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr10:50014800-50019600	Weak transcription	NHLF	lung
12	chr10:50014800-50020600	Weak transcription	Adipose Nuclei	Adipose
13	chr10:50014800-50020800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr10:50014800-50020800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr10:50015000-50023000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
16	chr10:50015200-50063400	Strong transcription	Primary B cells from cord blood	blood
17	chr10:50015600-50023200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr10:50015600-50029800	Weak transcription	Gastric	stomach
19	chr10:50016200-50063000	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr10:50016200-50063000	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr10:50016600-50019600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:50016600-50022800	Strong transcription	Spleen	Spleen
23	chr10:50016600-50062400	Strong transcription	Primary neutrophils fromperipheralblood	blood
24	chr10:50017000-50019800	Weak transcription	Fetal Muscle Leg	muscle
25	chr10:50017000-50022600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr10:50017600-50023600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr10:50017800-50022000	Weak transcription	Lung	lung
28	chr10:50018000-50019400	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr10:50018400-50021200	Enhancers	Fetal Muscle Trunk	muscle
30	chr10:50018600-50019800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr10:50018800-50019400	Strong transcription	Primary T cells from cord blood	blood
32	chr10:50018800-50019600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr10:50018800-50020400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr10:50019000-50020200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr10:50019000-50020200	Enhancers	NHEK	skin

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