Variant report

Variant	rs3860189
Chromosome Location	chr10:50043766-50043767
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50041914..50044579-chr10:50047954..50050540,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10776647	0.98[ASN][1000 genomes]
rs10776648	0.98[ASN][1000 genomes]
rs10776649	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10776650	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10776651	0.82[EUR][1000 genomes]
rs10857655	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11101511	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11101529	0.98[ASN][1000 genomes]
rs11101530	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11101531	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11101532	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1904596	0.89[ASN][1000 genomes]
rs2002587	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2002588	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2250389	0.90[ASN][1000 genomes]
rs2448539	0.86[ASN][1000 genomes]
rs2448540	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2448545	0.98[ASN][1000 genomes]
rs2457214	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2620891	0.98[ASN][1000 genomes]
rs2620896	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2620898	0.98[ASN][1000 genomes]
rs2620904	0.98[ASN][1000 genomes]
rs2663051	0.98[ASN][1000 genomes]
rs2940727	0.92[ASN][1000 genomes]
rs35932562	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3747872	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3747873	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3747874	0.98[ASN][1000 genomes]
rs3747875	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3747877	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3860188	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3860190	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6537580	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6537581	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6537582	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7074067	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7079766	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7093474	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7094742	0.83[EUR][1000 genomes]
rs7912174	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7913005	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7915025	0.84[EUR][1000 genomes]
rs7916558	0.84[EUR][1000 genomes]
rs7919656	0.94[ASN][1000 genomes]
rs877819	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs877820	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs877821	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50013600-50061000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr10:50015200-50063400	Strong transcription	Primary B cells from cord blood	blood
3	chr10:50016200-50063000	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr10:50016200-50063000	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr10:50016600-50062400	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr10:50020000-50052000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr10:50025000-50062800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr10:50026000-50048200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:50028600-50070200	Strong transcription	Primary B cells from peripheral blood	blood
10	chr10:50029000-50051400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:50029200-50052000	Strong transcription	Primary hematopoietic stem cells	blood
12	chr10:50038200-50043800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr10:50038200-50047600	Strong transcription	GM12878-XiMat	blood
14	chr10:50039600-50044400	Weak transcription	Duodenum Mucosa	Duodenum
15	chr10:50041600-50055400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr10:50042200-50059200	Weak transcription	Primary T cells from cord blood	blood
17	chr10:50043000-50044000	Weak transcription	Spleen	Spleen
18	chr10:50043400-50044200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr10:50043600-50044800	Weak transcription	Fetal Muscle Trunk	muscle
20	chr10:50043600-50045400	Weak transcription	Fetal Muscle Leg	muscle

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