Variant report

Variant	rs7919656
Chromosome Location	chr10:50026020-50026021
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:50025573-50026606	GM12878	blood:	n/a	n/a
2	POLR2A	chr10:50025269-50027095	GM12878	blood:	n/a	n/a
3	POLR2A	chr10:50025651-50026383	GM12892	blood:	n/a	n/a
4	POLR2A	chr10:50025692-50026205	GM12892	blood:	n/a	n/a
5	POLR2A	chr10:50025552-50026445	GM12892	blood:	n/a	n/a
6	POLR2A	chr10:50025933-50026022	GM12878	blood:	n/a	n/a
7	POLR2A	chr10:50025699-50026594	GM12892	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:50011032..50014812-chr10:50025927..50027937,3	K562	blood:
2	chr10:50023366..50027045-chr10:50027536..50030400,3	K562	blood:
3	chr10:50009310..50017840-chr10:50018505..50026491,17	MCF-7	breast:
4	chr10:50024379..50026202-chr10:50028967..50031391,2	MCF-7	breast:

Variant related genes	Relation type
WDFY4	TF binding region
ENSG00000128815	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10776647	1.00[ASW][hapmap];0.96[CEU][hapmap];0.84[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap];0.91[LWK][hapmap];0.96[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10776648	0.96[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10857655	0.84[CHB][hapmap];0.89[JPT][hapmap];0.95[ASN][1000 genomes]
rs11101511	0.90[ASN][1000 genomes]
rs11101529	0.96[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11101530	0.92[CHD][hapmap];0.89[JPT][hapmap];0.95[ASN][1000 genomes]
rs11101531	0.82[CHB][hapmap];0.88[JPT][hapmap];0.95[ASN][1000 genomes]
rs11101532	0.95[ASN][1000 genomes]
rs1904596	0.92[CHB][hapmap];0.96[CHD][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs2002587	0.95[ASN][1000 genomes]
rs2002588	0.84[CHB][hapmap];0.89[JPT][hapmap];0.95[ASN][1000 genomes]
rs2250389	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2448539	1.00[CEU][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.98[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2448540	0.85[ASN][1000 genomes]
rs2448545	0.85[CEU][hapmap];0.82[CHB][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2457214	0.84[CHD][hapmap];0.85[ASN][1000 genomes]
rs2620891	0.89[CEU][hapmap];0.84[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap];0.84[MEX][hapmap];0.98[TSI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2620896	0.90[ASN][1000 genomes]
rs2620898	0.92[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2620904	0.90[CEU][hapmap];0.83[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2663051	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2663052	0.85[TSI][hapmap]
rs2940727	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2943244	0.89[JPT][hapmap]
rs35932562	0.95[ASN][1000 genomes]
rs3747872	0.84[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap];0.95[ASN][1000 genomes]
rs3747873	0.95[ASN][1000 genomes]
rs3747874	0.96[CEU][hapmap];0.84[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3747875	0.84[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap];0.95[ASN][1000 genomes]
rs3747877	0.95[ASN][1000 genomes]
rs3860188	0.84[CHB][hapmap];0.89[JPT][hapmap];0.95[ASN][1000 genomes]
rs3860189	0.94[ASN][1000 genomes]
rs3860190	0.95[ASN][1000 genomes]
rs6537580	0.84[CHB][hapmap];0.95[ASN][1000 genomes]
rs7078312	0.85[EUR][1000 genomes]
rs7079766	0.84[CHB][hapmap];0.89[JPT][hapmap];0.95[ASN][1000 genomes]
rs7093474	0.95[ASN][1000 genomes]
rs7900138	0.84[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap]
rs7913005	0.84[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs7922169	0.87[TSI][hapmap];0.85[EUR][1000 genomes]
rs877819	0.84[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap];0.95[ASN][1000 genomes]
rs877820	0.95[ASN][1000 genomes]
rs877821	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50005200-50026800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:50009600-50028000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:50013600-50028200	Strong transcription	Primary B cells from peripheral blood	blood
4	chr10:50013600-50061000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr10:50014200-50030000	Weak transcription	Right Atrium	heart
6	chr10:50015200-50063400	Strong transcription	Primary B cells from cord blood	blood
7	chr10:50015600-50029800	Weak transcription	Gastric	stomach
8	chr10:50016200-50063000	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr10:50016200-50063000	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr10:50016600-50062400	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr10:50019400-50029000	Weak transcription	Primary T cells from cord blood	blood
12	chr10:50020000-50052000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr10:50021200-50027800	Weak transcription	Fetal Thymus	thymus
14	chr10:50022600-50040400	Weak transcription	Lung	lung
15	chr10:50023400-50029200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr10:50025000-50026400	Strong transcription	Primary hematopoietic stem cells	blood
17	chr10:50025000-50026800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr10:50025000-50062800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr10:50025200-50028600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr10:50025200-50028600	Strong transcription	Spleen	Spleen
21	chr10:50025200-50032000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr10:50025400-50026600	Strong transcription	GM12878-XiMat	blood
23	chr10:50025400-50029800	Weak transcription	Esophagus	oesophagus
24	chr10:50026000-50048200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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