Variant report

Variant	rs11101529
Chromosome Location	chr10:50037974-50037975
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50036113..50038960-chr10:50041026..50043075,3	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10776647	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10776648	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10776649	0.81[ASN][1000 genomes]
rs10857655	0.93[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11101511	0.86[CHB][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes]
rs11101530	0.92[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11101531	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11101532	0.99[ASN][1000 genomes]
rs1904596	0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2002587	0.99[ASN][1000 genomes]
rs2002588	0.93[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2127590	0.89[JPT][hapmap]
rs2170132	0.89[JPT][hapmap]
rs2250389	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2448539	0.96[CEU][hapmap];0.86[CHB][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2448540	0.88[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs2448545	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2457214	0.85[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs2620891	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2620896	0.93[CHB][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs2620898	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2620904	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2663044	0.89[JPT][hapmap]
rs2663051	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2928401	0.89[JPT][hapmap]
rs2940727	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2943244	1.00[JPT][hapmap]
rs35932562	0.99[ASN][1000 genomes]
rs3747872	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs3747873	0.99[ASN][1000 genomes]
rs3747874	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3747875	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs3747877	0.99[ASN][1000 genomes]
rs3860188	0.93[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs3860189	0.98[ASN][1000 genomes]
rs3860190	0.99[ASN][1000 genomes]
rs6537576	0.89[JPT][hapmap]
rs6537580	0.93[CHB][hapmap];0.90[JPT][hapmap];0.99[ASN][1000 genomes]
rs7078312	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7079766	0.93[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7093474	0.99[ASN][1000 genomes]
rs726786	0.89[JPT][hapmap]
rs7900138	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7913005	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7919656	0.96[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7922169	0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs877819	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs877820	0.99[ASN][1000 genomes]
rs877821	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50013600-50061000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr10:50015200-50063400	Strong transcription	Primary B cells from cord blood	blood
3	chr10:50016200-50063000	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr10:50016200-50063000	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr10:50016600-50062400	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr10:50020000-50052000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr10:50022600-50040400	Weak transcription	Lung	lung
8	chr10:50025000-50062800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr10:50026000-50048200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:50028400-50042000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr10:50028600-50070200	Strong transcription	Primary B cells from peripheral blood	blood
12	chr10:50029000-50051400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr10:50029200-50052000	Strong transcription	Primary hematopoietic stem cells	blood
14	chr10:50030800-50038200	Weak transcription	Spleen	Spleen
15	chr10:50036600-50038200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr10:50036600-50040000	Weak transcription	Adipose Nuclei	Adipose
17	chr10:50036600-50040200	Weak transcription	Primary T cells from cord blood	blood
18	chr10:50037000-50038200	Weak transcription	GM12878-XiMat	blood
19	chr10:50037200-50040400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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