Variant report

Variant	rs7900138
Chromosome Location	chr10:50041123-50041124
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50036113..50038960-chr10:50041026..50043075,3	K562	blood:
2	chr10:50040628..50043627-chr10:50045271..50047219,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10776647	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs10776648	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10776650	0.93[YRI][hapmap]
rs10857655	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11101511	0.91[CEU][hapmap];0.83[CHB][hapmap];0.88[JPT][hapmap]
rs11101529	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11101530	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap]
rs11101531	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1904596	0.92[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap]
rs1993985	0.82[TSI][hapmap]
rs2002588	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2127590	0.89[JPT][hapmap]
rs2170132	0.89[JPT][hapmap]
rs2448539	0.86[CHB][hapmap];0.84[CHD][hapmap]
rs2448540	0.96[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap]
rs2448545	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2457214	0.96[CEU][hapmap];0.85[CHB][hapmap];0.84[CHD][hapmap];0.89[JPT][hapmap];0.88[TSI][hapmap]
rs2620887	0.82[TSI][hapmap]
rs2620891	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2620896	0.88[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap]
rs2620898	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2620904	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2663019	0.82[TSI][hapmap]
rs2663044	0.89[JPT][hapmap]
rs2663049	0.82[TSI][hapmap]
rs2928401	0.89[JPT][hapmap]
rs2940712	0.82[TSI][hapmap]
rs2943244	1.00[JPT][hapmap]
rs3747872	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap]
rs3747874	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs3747875	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap]
rs3860188	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6537576	0.89[JPT][hapmap]
rs6537580	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs6537582	0.92[YRI][hapmap]
rs7079766	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7094742	0.84[TSI][hapmap]
rs726786	0.89[JPT][hapmap]
rs7912174	0.89[ASW][hapmap];0.91[LWK][hapmap];0.84[TSI][hapmap];0.93[YRI][hapmap]
rs7913005	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap]
rs7915025	0.84[TSI][hapmap]
rs7919656	0.84[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap]
rs877819	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50013600-50061000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr10:50015200-50063400	Strong transcription	Primary B cells from cord blood	blood
3	chr10:50016200-50063000	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr10:50016200-50063000	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr10:50016600-50062400	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr10:50020000-50052000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr10:50025000-50062800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr10:50026000-50048200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:50028400-50042000	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr10:50028600-50070200	Strong transcription	Primary B cells from peripheral blood	blood
11	chr10:50029000-50051400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:50029200-50052000	Strong transcription	Primary hematopoietic stem cells	blood
13	chr10:50038200-50043800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr10:50038200-50047600	Strong transcription	GM12878-XiMat	blood
15	chr10:50039600-50044400	Weak transcription	Duodenum Mucosa	Duodenum
16	chr10:50040200-50042200	Strong transcription	Primary T cells from cord blood	blood
17	chr10:50040400-50041400	ZNF genes & repeats	Spleen	Spleen
18	chr10:50040400-50041600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr10:50041000-50042600	Weak transcription	Pancreas	Pancrea

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