Variant report

Variant	rs2928393
Chromosome Location	chr10:49989419-49989420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs2127590	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2170132	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2620888	0.87[ASN][1000 genomes]
rs2620889	0.83[ASN][1000 genomes]
rs2620903	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2663031	0.80[EUR][1000 genomes]
rs2663035	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2663044	0.91[ASN][1000 genomes]
rs2663053	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2928401	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2940704	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2940707	0.80[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2947344	0.80[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs2947345	0.80[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs4838648	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6537576	0.91[ASN][1000 genomes]
rs726786	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895374	chr10:49969556-49990081	Strong transcription Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49967600-50000000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
2	chr10:49967800-50006800	Strong transcription	Primary B cells from peripheral blood	blood
3	chr10:49969400-49989800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:49977000-49990400	Weak transcription	Fetal Brain Male	brain
5	chr10:49979600-49990600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:49979800-49991000	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr10:49979800-49992400	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr10:49980000-49990400	Weak transcription	Right Atrium	heart
9	chr10:49981200-49991000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr10:49981400-50007200	Strong transcription	Primary B cells from cord blood	blood
11	chr10:49982000-49992200	Strong transcription	Primary neutrophils fromperipheralblood	blood
12	chr10:49982400-49991400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr10:49982400-50000800	Weak transcription	Fetal Thymus	thymus
14	chr10:49982600-50006800	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr10:49985600-49999800	Weak transcription	Duodenum Mucosa	Duodenum
16	chr10:49986400-49990200	Weak transcription	Fetal Lung	lung
17	chr10:49986600-49990400	Weak transcription	Lung	lung
18	chr10:49988800-49997600	Weak transcription	Spleen	Spleen
19	chr10:49989000-49990000	Weak transcription	GM12878-XiMat	blood
20	chr10:49989200-49990200	Weak transcription	Primary hematopoietic stem cells	blood

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