Variant report

Variant	rs2663035
Chromosome Location	chr10:50000908-50000909
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:49998728..50000919-chr10:50001573..50004326,2	K562	blood:
2	chr10:50000394..50002013-chr10:50005328..50007028,2	MCF-7	breast:
3	chr10:49986976..49988548-chr10:50000055..50002559,2	MCF-7	breast:
4	chr10:49995916..49998699-chr10:49999856..50002398,4	K562	blood:
5	chr10:50000720..50003091-chr10:50019887..50021986,2	MCF-7	breast:
6	chr10:49998728..50000670-chr10:50000841..50003073,2	K562	blood:
7	chr10:49997425..50000920-chr10:50010658..50015147,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000128815	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2127590	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2170132	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2620903	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2663044	0.80[ASN][1000 genomes]
rs2663053	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2928393	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2928401	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2940704	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4838648	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6537576	0.80[ASN][1000 genomes]
rs726786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49967800-50006800	Strong transcription	Primary B cells from peripheral blood	blood
2	chr10:49981400-50007200	Strong transcription	Primary B cells from cord blood	blood
3	chr10:49982600-50006800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr10:49992800-50005200	Strong transcription	Primary hematopoietic stem cells	blood
5	chr10:49993400-50002200	Strong transcription	GM12878-XiMat	blood
6	chr10:49993600-50001000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:49993800-50005600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr10:49996600-50005400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr10:49999200-50005600	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr10:49999200-50006200	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr10:49999400-50003400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr10:49999600-50001000	Enhancers	Aorta	Aorta
13	chr10:49999600-50001000	Enhancers	Ovary	ovary
14	chr10:49999600-50001200	Enhancers	Esophagus	oesophagus
15	chr10:49999600-50003000	Enhancers	Left Ventricle	heart
16	chr10:49999800-50001000	Enhancers	Right Ventricle	heart
17	chr10:49999800-50001200	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr10:49999800-50001200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr10:49999800-50003000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr10:49999800-50003200	Enhancers	HMEC	breast
21	chr10:50000000-50001200	Enhancers	Fetal Muscle Leg	muscle
22	chr10:50000000-50001600	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr10:50000000-50003000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr10:50000000-50003200	Enhancers	NHEK	skin
25	chr10:50000000-50008400	Weak transcription	Duodenum Mucosa	Duodenum
26	chr10:50000200-50001000	Enhancers	Adipose Nuclei	Adipose
27	chr10:50000200-50001200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr10:50000200-50001200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr10:50000400-50008400	Weak transcription	Colonic Mucosa	Colon
30	chr10:50000600-50002200	Weak transcription	Spleen	Spleen
31	chr10:50000800-50001000	Enhancers	Fetal Thymus	thymus
32	chr10:50000800-50001000	Enhancers	Lung	lung
33	chr10:50000800-50001000	Enhancers	Rectal Smooth Muscle	rectum
34	chr10:50000800-50001200	Genic enhancers	Primary neutrophils fromperipheralblood	blood
35	chr10:50000800-50001200	Enhancers	Brain Hippocampus Middle	brain
36	chr10:50000800-50002000	Enhancers	Primary T cells from cord blood	blood

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