Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:53665161..53666951-chr3:53670701..53672680,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs13059151	0.97[EUR][1000 genomes]
rs13063116	0.87[CEU][hapmap]
rs13084908	0.97[EUR][1000 genomes]
rs2292918	0.84[CHB][hapmap]
rs2633709	1.00[JPT][hapmap]
rs2680657	0.84[CHB][hapmap]
rs2680659	0.85[CHB][hapmap]
rs35768922	0.97[EUR][1000 genomes]
rs35989759	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs36036528	0.97[EUR][1000 genomes]
rs3774487	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3774488	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3774490	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3774496	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3774503	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3821853	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66596667	0.97[EUR][1000 genomes]
rs6786894	0.87[CEU][hapmap]
rs6788419	1.00[JPT][hapmap]
rs71301844	0.97[EUR][1000 genomes]
rs898413	1.00[JPT][hapmap]
rs898414	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1001128	chr3:53659570-53927842	Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53652800-53684000	Weak transcription	Right Atrium	heart
2	chr3:53666400-53681400	Weak transcription	Fetal Lung	lung
3	chr3:53667600-53680600	Weak transcription	Fetal Intestine Large	intestine
4	chr3:53668200-53672600	Weak transcription	Stomach Mucosa	stomach
5	chr3:53670600-53674800	Weak transcription	Fetal Intestine Small	intestine
6	chr3:53670600-53676400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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