Variant report

Variant	rs6786894
Chromosome Location	chr3:53659939-53659940
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13063116	1.00[CEU][hapmap];0.84[GIH][hapmap];0.81[MEX][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes]
rs2946522	0.87[CEU][hapmap]
rs34848605	0.91[EUR][1000 genomes]
rs3774477	0.93[EUR][1000 genomes]
rs3774482	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3774487	0.87[CEU][hapmap]
rs3774488	0.87[CEU][hapmap]
rs3774490	0.87[CEU][hapmap]
rs3774503	0.87[CEU][hapmap]
rs3774522	0.83[EUR][1000 genomes]
rs3821853	0.85[CEU][hapmap]
rs6445597	0.83[CHD][hapmap]
rs71301842	0.91[EUR][1000 genomes]
rs71301843	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1001128	chr3:53659570-53927842	Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53652800-53684000	Weak transcription	Right Atrium	heart
2	chr3:53653200-53660400	Weak transcription	Fetal Intestine Small	intestine
3	chr3:53657800-53661400	Strong transcription	Fetal Intestine Large	intestine
4	chr3:53658600-53660200	Enhancers	Brain Germinal Matrix	brain
5	chr3:53659000-53660400	Weak transcription	Fetal Lung	lung
6	chr3:53659000-53662400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr3:53659000-53662800	Weak transcription	Fetal Brain Male	brain
8	chr3:53659200-53663400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr3:53659400-53664600	Weak transcription	Fetal Kidney	kidney
10	chr3:53659600-53662800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr3:53659600-53662800	Weak transcription	Fetal Brain Female	brain
12	chr3:53659600-53663400	Weak transcription	Lung	lung
13	chr3:53659600-53663600	Weak transcription	Pancreas	Pancrea
14	chr3:53659800-53661600	Enhancers	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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