Variant report

Variant	rs3774477
Chromosome Location	chr3:53651483-53651484
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13063116	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34848605	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3774482	0.95[EUR][1000 genomes]
rs3774522	0.82[EUR][1000 genomes]
rs6786894	0.93[EUR][1000 genomes]
rs71301841	0.82[EUR][1000 genomes]
rs71301842	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71301843	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73840150	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53648800-53651600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr3:53650000-53652000	Enhancers	Fetal Lung	lung
3	chr3:53650200-53653200	Strong transcription	Fetal Intestine Small	intestine
4	chr3:53650800-53651800	Enhancers	Brain Angular Gyrus	brain
5	chr3:53650800-53653200	Enhancers	Colonic Mucosa	Colon
6	chr3:53650800-53653600	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr3:53651000-53651800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr3:53651000-53652000	Enhancers	Lung	lung
9	chr3:53651200-53652400	Enhancers	Brain Hippocampus Middle	brain
10	chr3:53651200-53653600	Weak transcription	Fetal Intestine Large	intestine
11	chr3:53651200-53653600	Enhancers	Rectal Mucosa Donor 29	rectum
12	chr3:53651200-53653600	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr3:53651400-53652800	Enhancers	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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