Variant report

Variant	rs73840150
Chromosome Location	chr3:53650737-53650738
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13059151	0.95[ASN][1000 genomes]
rs13063116	0.82[EUR][1000 genomes]
rs13076915	0.85[EUR][1000 genomes]
rs13084908	1.00[ASN][1000 genomes]
rs13086947	0.89[EUR][1000 genomes]
rs2612020	0.83[EUR][1000 genomes]
rs2680657	0.83[EUR][1000 genomes]
rs2680659	0.83[EUR][1000 genomes]
rs34848605	0.82[EUR][1000 genomes]
rs35768922	0.95[ASN][1000 genomes]
rs36006337	0.85[EUR][1000 genomes]
rs36036528	1.00[ASN][1000 genomes]
rs3774477	0.84[EUR][1000 genomes]
rs66596667	0.95[ASN][1000 genomes]
rs71301841	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71301842	0.82[EUR][1000 genomes]
rs71301843	0.84[EUR][1000 genomes]
rs71301844	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53640000-53650800	Weak transcription	Fetal Intestine Large	intestine
2	chr3:53645400-53651000	Weak transcription	Lung	lung
3	chr3:53646800-53651000	Weak transcription	Spleen	Spleen
4	chr3:53648800-53651600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr3:53649600-53651200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr3:53649800-53650800	Weak transcription	Colonic Mucosa	Colon
7	chr3:53650000-53651000	Bivalent Enhancer	Adipose Nuclei	Adipose
8	chr3:53650000-53651200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr3:53650000-53651200	Weak transcription	Brain Hippocampus Middle	brain
10	chr3:53650000-53651200	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr3:53650000-53651400	Enhancers	Fetal Kidney	kidney
12	chr3:53650000-53651400	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr3:53650000-53652000	Enhancers	Fetal Lung	lung
14	chr3:53650200-53650800	Enhancers	Brain Germinal Matrix	brain
15	chr3:53650200-53651000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr3:53650200-53651200	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr3:53650200-53651400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr3:53650200-53651400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr3:53650200-53651400	Enhancers	Fetal Muscle Leg	muscle
20	chr3:53650200-53651400	Enhancers	Placenta	Placenta
21	chr3:53650200-53653200	Strong transcription	Fetal Intestine Small	intestine
22	chr3:53650400-53650800	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr3:53650400-53650800	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr3:53650400-53651000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr3:53650400-53651400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr3:53650600-53651000	Enhancers	Duodenum Mucosa	Duodenum
27	chr3:53650600-53651200	Enhancers	Fetal Brain Male	brain

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