Variant report

Variant	rs34848605
Chromosome Location	chr3:53647954-53647955
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13063116	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3774477	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3774482	0.93[EUR][1000 genomes]
rs3774522	0.81[EUR][1000 genomes]
rs6786894	0.91[EUR][1000 genomes]
rs71301841	0.84[EUR][1000 genomes]
rs71301842	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71301843	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73840150	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53635400-53650200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:53639400-53650200	Weak transcription	Fetal Intestine Small	intestine
3	chr3:53640000-53650800	Weak transcription	Fetal Intestine Large	intestine
4	chr3:53641200-53650000	Weak transcription	Fetal Lung	lung
5	chr3:53645400-53651000	Weak transcription	Lung	lung
6	chr3:53646200-53649200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr3:53646600-53648200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr3:53646800-53651000	Weak transcription	Spleen	Spleen
9	chr3:53647000-53648200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr3:53647000-53649000	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr3:53647000-53650200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr3:53647000-53650400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr3:53647600-53648400	Weak transcription	Primary B cells from peripheral blood	blood
14	chr3:53647800-53648400	Weak transcription	Primary B cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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