Variant report

Variant	rs3774522
Chromosome Location	chr3:53698255-53698256
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13063116	0.81[EUR][1000 genomes]
rs13076915	0.81[EUR][1000 genomes]
rs1401492	0.85[ASN][1000 genomes]
rs34848605	0.81[EUR][1000 genomes]
rs36006337	0.81[EUR][1000 genomes]
rs3774477	0.82[EUR][1000 genomes]
rs3774482	0.84[EUR][1000 genomes]
rs3774508	0.85[ASN][1000 genomes]
rs6784608	0.87[ASN][1000 genomes]
rs6786894	0.83[EUR][1000 genomes]
rs6802129	0.96[ASN][1000 genomes]
rs71301842	0.81[EUR][1000 genomes]
rs71301843	0.82[EUR][1000 genomes]
rs73840164	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1001128	chr3:53659570-53927842	Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1013783	chr3:53694418-53934781	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53677600-53700000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr3:53683200-53744200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr3:53684800-53698600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr3:53689600-53707400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr3:53692000-53707600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr3:53694200-53699000	Strong transcription	Fetal Intestine Small	intestine
7	chr3:53694200-53699200	Strong transcription	Pancreatic Islets	Pancreatic Islet
8	chr3:53694200-53700400	Strong transcription	Fetal Intestine Large	intestine
9	chr3:53694400-53701000	Weak transcription	Fetal Kidney	kidney
10	chr3:53695800-53698600	Strong transcription	Fetal Lung	lung
11	chr3:53696000-53700200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr3:53696800-53706600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr3:53697400-53698800	ZNF genes & repeats	Spleen	Spleen
14	chr3:53697400-53699000	Enhancers	Placenta	Placenta
15	chr3:53697600-53702400	Weak transcription	Liver	Liver
16	chr3:53698000-53714000	Weak transcription	Brain Substantia Nigra	brain
17	chr3:53698200-53698800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links