Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11167571	0.96[ASN][1000 genomes]
rs12188765	0.96[ASN][1000 genomes]
rs12657451	0.93[ASN][1000 genomes]
rs13188666	0.96[ASN][1000 genomes]
rs154688	0.96[ASN][1000 genomes]
rs154689	0.96[ASN][1000 genomes]
rs17804712	0.96[ASN][1000 genomes]
rs294948	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs294950	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs294956	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs294960	0.82[CHB][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs294961	0.87[CHB][hapmap]
rs294964	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap]
rs3911204	0.91[ASN][1000 genomes]
rs4403170	0.96[ASN][1000 genomes]
rs59349033	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6579919	0.96[ASN][1000 genomes]
rs68004240	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71588037	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71588038	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760935	chr5:151463117-151586051	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv883040	chr5:151471642-151596273	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs294952	C20orf118	trans	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151550000-151552000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:151550200-151551800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr5:151550400-151551800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr5:151550400-151551800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr5:151550400-151554000	Weak transcription	Aorta	Aorta
6	chr5:151550600-151553800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr5:151550800-151551800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr5:151550800-151551800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr5:151551600-151551800	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr5:151551600-151551800	Enhancers	Ovary	ovary
11	chr5:151551600-151552000	Enhancers	H9 Cell Line	embryonic stem cell
12	chr5:151551600-151556600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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